R 4.3 packages -- generated 2026-05-05
Reproducibility
Older versions may be available in historic snapshots (run module avail R-cbrg for history).
See R-cbrg for details.
R 4.3 packages
syntax: module / version ( latest snapshot )
abind/1.4-5 ggnewscale/0.4.8 pwr/1.3-0
acepack/1.4.1 ggplot.multistats/1.0.0 qap/0.1-2
ACME/2.56.0 ggplot2/3.5.1 QCA/3.19
ade4/1.7-22 /3.4.2 (202404) QFeatures/1.10.0
adegraphics/1.0-18 ggplot2movies/0.0.1 qlcMatrix/0.9.7
admisc/0.35 ggplotify/0.1.0 qpdf/1.3.2
/0.32 (202404) ggpointdensity/0.1.0 qqconf/1.3.2
AER/1.2-10 ggpolypath/0.2.0 qqman/0.1.8
affxparser/1.72.0 ggprism/1.0.5 qs/0.25.5
affy/1.78.0 ggpubr/0.6.0 quadprog/1.5-8
affyio/1.70.0 ggraph/2.1.0 quantmod/0.4.22
affyPLM/1.76.1 ggrastr/1.0.1 quantreg/5.95
aggregation/1.0.1 ggrepel/0.9.3 questionr/0.7.8
airr/1.4.1 ggridges/0.5.4 qusage/2.34.0
airway/1.20.0 ggsci/3.0.0 qvalue/2.32.0
akima/0.6-3.4 ggseqlogo/0.1 qvcalc/1.0.2
alakazam/1.3.0 ggsignif/0.6.4 R.cache/0.16.0
ALL/1.42.0 ggtext/0.1.2 R.devices/2.17.1
amap/0.8-19 ggthemes/4.2.4 R.matlab/3.7.0
AmplificationTimeR/1.1.1 ggtree/3.8.0 R.methodsS3/1.8.2
annotate/1.78.0 ggupset/0.3.0 R.oo/1.25.0
AnnotationDbi/1.62.1 ggVennDiagram/1.5.2 R.rsp/0.45.0
AnnotationFilter/1.24.0 /1.2.2 (202404) R.utils/2.12.2
AnnotationForge/1.42.0 gh/1.4.0 R2HTML/2.3.3
AnnotationHub/3.8.0 git2r/0.32.0 R4RNA/1.28.0
AnVIL/1.12.1 gitcreds/0.1.2 R6/2.5.1
anytime/0.3.9 gld/2.6.6 ragg/1.2.5
aod/1.3.2 glmGamPoi/1.12.1 RaggedExperiment/1.24.0
ape/5.7-1 glmmSeq/0.5.5 rainbow/3.7
apeglm/1.22.1 glmmTMB/1.1.8 randomcoloR/1.1.0.1
aplot/0.1.10 /1.1.7 (202310) randomForest/4.7-1.1
ArchR/1.0.2 glmnet/4.1-7 randomForestSRC/3.2.1
argparse/2.2.2 glmpath/0.98 ranger/0.15.1
argparser/0.7.1 glmpca/0.2.0 RANN/2.6.1
aricode/1.0.2 GlobalOptions/0.1.2 rapiclient/0.1.3
aroma.light/3.30.0 globals/0.16.2 RApiSerialize/0.1.2
arrangements/1.1.9 globaltest/5.54.0 rappdirs/0.3.3
arrow/12.0.0 glue/1.6.2 rARPACK/0.11-0
ash/1.0-15 gmm/1.7 raster/3.6-20
ashr/2.2-54 gmodels/2.18.1.1 RBGL/1.76.0
askpass/1.1 gmp/0.7-1 rbibutils/2.2.13
assertive.base/0.0-9 GO.db/3.17.0 Rcgmin/2022-4.30
assertive.files/0.0-2 goftest/1.2-3 RCircos/1.2.2
assertive.numbers/0.0-2 googledrive/2.1.1 RcisTarget/1.20.0
assertive.properties/0.0-5 googlesheets4/1.1.1 rcmdcheck/1.4.0
assertive.types/0.0-3 googleVis/0.7.1 RColorBrewer/1.1-3
assertthat/0.2.1 GOSemSim/2.26.0 Rcpm/1.0.4
ATACseqQC/1.24.0 goseq/1.52.0 Rcpp/1.0.10
ath1121501.db/3.13.0 GOstats/2.66.0 RcppAnnoy/0.0.20
ath1121501cdf/2.18.0 GOsummaries/2.36.0 RcppArmadillo/0.12.4.1.0
AUC/0.3.2 goTools/1.74.0 RcppEigen/0.3.3.9.3
AUCell/1.22.0 gower/1.0.1 RcppGSL/0.3.13
aws.s3/0.3.21 GPfit/1.0-8 RcppHNSW/0.4.1
aws.signature/0.6.0 gplots/3.1.3 RcppML/0.3.7
Azimuth/0.4.6 gProfileR/0.7.0 RcppNumerical/0.5-0
/0.4.6.9004 (202310) gprofiler2/0.2.1 RcppParallel/5.1.7
babel/0.3-0 graph/1.78.0 RcppPlanc/1.0.0
babelgene/22.9 graphite/1.46.0 RcppProgress/0.4.2
babelwhale/1.2.0 graphlayouts/1.0.0 RcppRoll/0.3.0
backports/1.4.1 GreyListChIP/1.32.0 RcppSpdlog/0.0.12
ballgown/2.32.0 gridBase/0.4-7 RcppTOML/0.2.2
base64/2.0.1 gridExtra/2.3 RcppZiggurat/0.1.6
base64enc/0.1-3 gridGraphics/0.5-1 RCurl/1.98-1.12
base64url/1.4 gridtext/0.1.5 Rdpack/2.4
basilisk/1.12.0 grImport/0.9-7 reactable/0.4.4
basilisk.utils/1.12.0 grImport2/0.2-0 reactome.db/1.84.0
batchelor/1.16.0 grr/0.9.5 ReactomeGSA/1.14.0
BatchJobs/1.9 gruffi/0.7.5 ReactomePA/1.44.0
batchtools/0.9.17 GSA/1.03.2 reactR/0.5.0
BayesFactor/0.9.12-4.4 GSEABase/1.62.0 readbitmap/0.1.5
bayesm/3.1-5 gsl/2.1-8 readr/2.1.4
bayesplot/1.10.0 gson/0.1.0 ReadWriter/0.3.2
BB/2019.10-1 gss/2.2-4 readxl/1.4.2
BBmisc/1.13 gsubfn/0.7 recipes/1.0.10
bbmle/1.0.25 GSVA/1.48.3 /1.0.6 (202404)
bcellViper/1.36.0 gt/0.10.1 RefManageR/1.4.0
BCRANK/1.62.0 gtable/0.3.3 regioneR/1.32.0
bdsmatrix/1.3-6 gtools/3.9.4 registry/0.5-1
beachmat/2.16.0 gtrellis/1.32.0 relations/0.6-13
beadarray/2.50.0 gtsummary/1.7.2 rem/1.3.1
BeadDataPackR/1.52.0 Gviz/1.44.0 remaCor/0.0.11
beanplot/1.3.1 h2o/3.40.0.1 rematch/1.0.1
bedr/1.0.7 hardhat/1.3.1 rematch2/2.1.2
beeswarm/0.4.0 /1.3.0 (202404) remotes/2.4.2
betareg/3.1-4 HardyWeinberg/1.7.8 renv/1.0.5
BH/1.81.0-1 harmony/1.0.3 /1.0.3 (202401)
BiasedUrn/2.0.9 /0.1.1 (202310) repr/1.1.6
bibtex/0.5.1 haven/2.5.2 reprex/2.0.2
bigD/0.2.0 HDF5Array/1.28.1 reshape/0.8.9
biglm/0.9-2.1 hdf5r/1.3.8 reshape2/1.4.4
bigmemory.sri/0.1.6 HDO.db/0.99.1 ResidualMatrix/1.10.0
bindr/0.1.1 hdrcde/3.4 restfulr/0.0.15
bindrcpp/0.2.2 heatmap3/1.1.9 reticulate/1.34.0
binom/1.1-1.1 heatmaply/1.4.2 /1.30 (202310)
Biobase/2.60.0 here/1.0.1 rex/1.2.1
BiocBaseUtils/1.2.0 hexbin/1.28.3 Rfast/2.0.7
BiocFileCache/2.8.0 HGNChelper/0.8.1 rfigshare/0.3.8
BiocGenerics/0.46.0 hgu133bcdf/2.18.0 rGADEM/2.48.0
BiocIO/1.10.0 hgu133bprobe/2.18.0 rgdal/1.6-6
BiocManager/1.30.21 hgu95acdf/2.18.0 rgeos/0.6-2
BiocNeighbors/1.18.0 hgu95aprobe/2.18.0 rgl/1.1.3
BiocParallel/1.34.2 hgu95av2/2.2.0 Rgraphviz/2.44.0
BiocSingular/1.16.0 HiCcompare/1.22.1 rhandsontable/0.3.8
BiocStyle/2.28.1 HiddenMarkov/1.8-13 rhdf5/2.44.0
BiocVersion/3.17.1 hierarchicell/1.0.0 rhdf5filters/1.12.1
biocViews/1.68.1 highcharter/0.9.4 Rhdf5lib/1.22.0
biomaRt/2.56.1 highlight/0.5.1 RhpcBLASctl/0.23-42
Biostrings/2.68.1 highr/0.10 Rhtslib/2.2.0
biovizBase/1.48.0 Hmisc/5.1-0 RInside/0.2.18
BiSeq/1.40.0 hms/1.1.3 rintrojs/0.3.2
bit/4.0.5 Homo.sapiens/1.3.1 rio/0.5.29
bit64/4.0.5 hopach/2.60.0 riverplot/0.10
bitops/1.0-7 HSMMSingleCell/1.20.0 rJava/1.0-6
blme/1.0-5 htmlTable/2.4.1 rjson/0.2.21
blob/1.2.4 htmltools/0.5.5 RJSONIO/1.3-1.8
blockmodeling/1.1.4 htmlwidgets/1.6.2 rlang/1.1.3
bluster/1.10.0 HTqPCR/1.54.0 /1.1.1 (202404)
BMA/3.18.17 httpcode/0.3.0 rle/0.9.2
bmp/0.3 httpuv/1.6.11 rlecuyer/0.3-7
bnbc/1.22.0 httr/1.4.6 rliger/2.0.1
bookdown/0.34 httr2/0.2.3 /1.0.0 (202407)
boot/1.3-28.1 HuExExonProbesetLocationHg19/0.0.3 rlist/0.4.6.2
Boruta/8.0.0 hwriter/1.3.2.1 Rmagic/2.0.3.999
BPCells/0.1.0 hypergeo/1.2-13 RMariaDB/1.2.2
BradleyTerry2/1.1-2 hypergraph/1.72.0 rmarkdown/2.22
brew/1.0-8 ica/1.0-3 rmdformats/1.0.4
brglm/0.7.2 IDPmisc/1.1.20 rmeta/3.0
bridgesampling/1.1-2 idr/1.3 Rmisc/1.5.1
brio/1.1.3 ids/1.0.1 Rmpfr/0.9-2
brms/2.19.0 igraph/1.5.0 RMTstat/0.3.1
Brobdingnag/1.2-9 illuminaHumanv1.db/1.26.0 rmutil/1.1.10
broom/1.0.5 illuminaHumanv3.db/1.26.0 RMySQL/0.10.25
/1.0.4 (202404) illuminaHumanv4.db/1.26.0 rncl/0.8.7
broom.helpers/1.15.0 illuminaio/0.42.0 RNeXML/2.4.11
BSgenome/1.68.0 immunarch/0.9.0 rngtools/1.5.2
BSgenome.Drerio.UCSC.danRer10/1.4.2 impute/1.74.1 robCompositions/2.3.1
BSgenome.Drerio.UCSC.danRer11/1.4.2 imputeLCMD/2.1 robust/0.7-1
BSgenome.Drerio.UCSC.danRer7/1.4.0 ineq/0.2-13 robustbase/0.95-1
BSgenome.Ggallus.UCSC.galGal5/1.4.2 infer/1.0.7 robustHD/0.7.4
BSgenome.Hsapiens.UCSC.hg18/1.3.1000 infinityFlow/1.10.0 ROCR/1.0-11
BSgenome.Hsapiens.UCSC.hg19/1.4.3 inflection/1.3.6 Rook/1.2
BSgenome.Hsapiens.UCSC.hg38/1.4.5 influenceR/0.1.0.2 rootSolve/1.8.2.3
BSgenome.Hsapiens.UCSC.hg38.masked/1.4.5 infotheo/1.2.0.1 roptim/0.1.6
BSgenome.Mmusculus.UCSC.mm10/1.4.3 ini/0.3.1 ROTS/1.28.0
BSgenome.Mmusculus.UCSC.mm39/1.4.3 inline/0.3.19 roxygen2/7.2.3
BSgenome.Mmusculus.UCSC.mm9/1.4.0 insight/0.19.1 rpart/4.1.19
bslib/0.5.0 InteractionSet/1.28.0 Rphenograph/0.99.1
bumphunter/1.42.0 interactiveDisplayBase/1.38.0 rprojroot/2.0.3
BUSpaRse/1.14.1 intergraph/2.0-2 RProtoBufLib/2.12.0
BWStest/0.2.2 interp/1.1-4 rrcov/1.7-3
ca/0.71.1 intervals/0.15.3 rsample/1.2.1
cachem/1.0.8 intrinsicDimension/1.2.0 /1.1.1 (202404)
Cairo/1.6-0 inum/1.0-5 Rsamtools/2.16.0
calibrate/1.7.7 invgamma/1.1 RSclient/0.7-9
callr/3.7.3 ipred/0.9-14 rsconnect/0.8.29
car/3.1-2 IRanges/2.34.1 Rserve/1.8-11
CARD/1.1 IRdisplay/1.1 Rsolnp/1.16
carData/3.0-5 IRkernel/1.3.2 rsparse/0.5.1
caret/6.0-94 irlba/2.3.5.1 RSpectra/0.16-1
carrier/0.1.1 iSEE/2.12.0 RSQLite/2.3.1
CATALYST/1.24.0 Iso/0.0-18.1 rstan/2.21.8
Category/2.66.0 isoband/0.2.7 rstanarm/2.21.4
caTools/1.18.2 IsoformSwitchAnalyzeR/1.21.0 rstantools/2.3.1
cBioPortalData/2.12.0 isotone/1.1-1 rstatix/0.7.2
cccd/1.6 ISwR/2.0-8 rstudioapi/0.16.0
ccRemover/1.0.4 iterators/1.0.14 /0.14 (202404)
celda/1.16.1 iterpc/0.4.2 Rsubread/2.14.1
CellBench/1.16.0 itertools/0.1-3 rsvd/1.0.5
CellChat/1.6.1 jackstraw/1.3.8 rsvg/2.4.0
cellhashR/1.0.3 janeaustenr/1.0.0 RTCGA/1.30.0
cellranger/1.1.0 janitor/2.2.0 RTCGAToolbox/2.30.0
Cepo/1.6.0 JASPAR2014/1.36.0 rtracklayer/1.60.0
CGHbase/1.60.0 JASPAR2020/0.99.10 Rtsne/0.16
CGHregions/1.58.0 jcolors/0.0.5 Rttf2pt1/1.3.12
changepoint/2.2.4 jpeg/0.1-10 rugarch/1.4-9
checkmate/2.2.0 jquerylib/0.1.4 RUnit/0.4.32
chemometrics/1.4.2 jsonlite/1.8.5 ruv/0.9.7.1
chickencdf/2.18.0 juicyjuice/0.1.0 rvcheck/0.2.1
chipenrich.data/2.24.0 KEGGgraph/1.60.0 RVenn/1.1.0
ChIPpeakAnno/3.34.1 KEGGREST/1.40.0 rversions/2.1.2
ChIPQC/1.36.1 Kendall/2.2.1 rvest/1.0.3
ChIPseeker/1.36.0 keras/2.11.1 rvg/0.3.3
chipseq/1.50.0 kernlab/0.9-32 Rvmmin/2018-4.17.1
chromVAR/1.22.1 KernSmooth/2.23-21 Rwave/2.6-5
chromVARmotifs/0.2.0 klaR/1.7-2 rzmq/0.9.9
chron/2.3-61 km.ci/0.5-6 s2/1.1.4
circlize/0.4.15 KMsurv/0.1-5 S4Arrays/1.2.0
CircStats/0.2-6 knitr/1.43 /1.0.4 (202310)
class/7.3-22 knn.covertree/1.0 S4Vectors/0.38.1
classInt/0.4-9 kohonen/3.0.11 sampleSelection/1.2-12
cli/3.6.2 koRpus/0.13-8 samr/3.0
/3.6.1 (202404) ks/1.14.0 sandwich/3.0-2
clipr/0.8.0 kSamples/1.2-9 sass/0.4.6
clisymbols/1.2.0 labeling/0.4.2 SAVER/1.1.2
clock/0.7.0 labelled/2.11.0 SC3/1.28.1
clue/0.3-64 laeken/0.5.2 ScaledMatrix/1.8.1
cluster/2.1.4 Lahman/11.0-0 scales/1.3.0
clusterGeneration/1.3.7 lambda.r/1.2.4 /1.2.1 (202404)
clusterProfiler/4.8.1 languageserver/0.3.15 scater/1.28.0
ClusterR/1.3.1 LaplacesDemon/16.1.6 scattermore/1.2
clustifyr/1.12.0 lars/1.3 scatterpie/0.1.9
clustree/0.5.0 later/1.3.2 scatterplot3d/0.3-44
cmdfun/1.0.2 /1.3.1 (202310) scClassify/1.12.0
cmprsk/2.2-11 lattice/0.21-8 sccore/1.0.3
cn.mops/1.46.0 latticeExtra/0.6-30 scCustomize/1.1.2
CNEr/1.36.0 lava/1.7.2.1 scDblFinder/1.14.0
coda/0.19-4 lazyeval/0.2.2 scde/2.28.2
CodeAndRoll2/2.3.4 lda/1.4.2 scistreer/1.1.0
codetools/0.2-19 leaps/3.1 SciViews/0.9-13.1
coin/1.4-2 LearnBayes/2.15.1 scoper/1.3.0
collapse/1.9.5 leiden/0.4.3 SCORPIUS/1.0.9
collections/0.3.7 leidenAlg/1.1.3 SCP/0.5.6
coloc/5.2.2 /1.0.5 (202407) scPower/1.0.0
colorRamps/2.3.1 leidenbase/0.1.18 scProportionTest/0.0.0.9000
colorspace/2.1-0 lfe/2.9-0 SCpubr/2.0.2.9000
colourpicker/1.2.0 lgr/0.4.4 scran/1.28.1
combinat/0.0-8 lhs/1.1.6 scRecover/1.16.0
commonmark/1.9.0 libcoin/1.0-9 scRepertoire/1.7.0
ComplexHeatmap/2.16.0 lifecycle/1.0.3 scrime/1.3.5
compositions/2.0-6 liger/2.0.1 scRNAseq/2.14.0
concaveman/1.1.0 lightgbm/3.3.5 scry/1.12.0
condiments/1.8.0 limma/3.56.1 scSHC/0.1.0
config/0.3.1 limmaGUI/1.76.0 sctransform/0.4.0
conflicted/1.2.0 limSolve/1.5.6 /0.3.5 (202404)
conos/1.5.0 LinkedMatrix/1.4.0 scuttle/1.10.1
conquer/1.3.3 linprog/0.9-4 segmented/1.6-4
ConsensusClusterPlus/1.64.0 lintr/3.0.2 selectr/0.4-2
contfrac/1.1-12 lisi/1.0 sendmailR/1.4-0
convert/1.76.0 listenv/0.9.0 seqinr/4.2-30
coRanking/0.2.4 littler/0.3.18 seqLogo/1.66.0
corpcor/1.6.10 lmds/0.1.0 seqPattern/1.32.0
corrplot/0.92 lme4/1.1-33 seriation/1.4.2
corrr/0.4.4 lmerTest/3.1-3 sessioninfo/1.2.2
covr/3.6.2 lmodel2/1.7-3 SetRank/1.1.0
cowplot/1.1.1 lmom/2.9 setRNG/2022.4-1
cpp11/0.4.3 Lmoments/1.3-1 sets/1.0-24
crayon/1.5.2 lmtest/0.9-40 Seurat/4.4.0
credentials/1.3.2 lobstr/1.1.2 /4.3.0.1 (202404)
crochet/2.3.0 locfdr/1.1-8 Seurat.utils/2.0.0
crossmap/0.4.0 locfit/1.5-9.7 SeuratData/0.2.2
crosstalk/1.2.0 loe/1.1 SeuratDisk/0.0.0.9020
crul/1.4.0 logger/0.2.2 SeuratObject/4.1.4
cubature/2.1.0 logging/0.10-108 /4.1.3 (202404)
Cubist/0.4.2.1 lokern/1.1-10 SeuratWrappers/0.3.1
cummeRbund/2.42.0 longitudinal/1.1.13 sf/1.0-12
curl/5.0.1 longmemo/1.1-2 sfsmisc/1.1-15
cvar/0.5 loo/2.6.0 sgeostat/1.0-27
cvAUC/1.1.4 lpSolve/5.6.18 shades/1.4.0
CVST/0.2-3 lpSolveAPI/5.5.2.0-17.9 shadowtext/0.1.2
cvTools/0.3.2 lsa/0.73.3 shape/1.4.6
cyclocomp/1.1.0 LSD/4.1-0 shazam/1.2.0
CytofRUV/0.1 lsmeans/2.30-0 shiny/1.7.4
cytolib/2.12.0 lubridate/1.9.2 shinyAce/0.4.2
CytoML/2.12.0 lwgeom/0.2-13 shinyBS/0.61.1
data.table/1.14.8 LymphoSeq/1.28.0 shinycssloaders/1.0.0
data.tree/1.0.0 LymphoSeqDB/0.99.2 shinydashboard/0.7.2
DataEditR/0.1.5 MAAPER/1.1.1 shinydashboardPlus/2.0.4
DBI/1.1.3 magic/1.6-1 shinyFiles/0.9.3
DBItest/1.7.3 magick/2.7.4 shinyhelper/0.3.2
dbplyr/2.3.2 magrittr/2.0.3 shinyjs/2.1.0
dbscan/1.1-11 mail/1.0 shinystan/2.6.0
ddalpha/1.3.13 MALDIquant/1.22.2 shinythemes/1.2.0
DDRTree/0.1.5 manipulate/1.0.1 shinyTree/0.2.7
deal/1.2-42 manipulateWidget/0.11.1 shinyWidgets/0.7.6
debugme/1.1.0 mapproj/1.2.11 ShortRead/1.58.0
decoupleR/2.6.0 maps/3.4.1 siggenes/1.74.0
deepSNV/1.46.0 maptools/1.1-6 Signac/1.10.0
DEGreport/1.36.0 markdown/1.7 SIMLR/1.26.1
DEGseq/1.54.0 MarkdownHelpers/0.2.8 simplifyEnrichment/1.12.0
Delaporte/8.1.0 MarkdownReports/4.5.9 SingleCellExperiment/1.22.0
DelayedArray/0.26.3 marray/1.78.0 SingleCellSignalR/1.12.0
DelayedMatrixStats/1.22.1 MASC/0.0.0.9000 (202310) SingleR/2.2.0
deldir/1.0-9 maSigPro/1.72.0 sitmo/2.0.2
demuxmix/1.2.0 MASS/7.3-60 SkewHyperbolic/0.4-0
dendextend/1.17.1 MAST/1.26.0 slackr/3.3.1
dendsort/0.3.4 mathjaxr/1.6-0 slam/0.1-50
densityClust/0.3.2 matlab/1.0.4 slider/0.3.0
densvis/1.10.1 Matrix/1.6-1 slingshot/2.8.0
DEoptimR/1.0-13 /1.5-4.1 (202404) sm/2.2-5.7.1
DEP2/0.5.27.2 Matrix.utils/0.9.7 smoof/1.6.0.3
desc/1.4.2 matrixcalc/1.0-6 smoother/1.1
descr/1.1.7 MatrixEQTL/2.3 sn/2.1.1
DescTools/0.99.49 MatrixExtra/0.1.13 sna/2.7-1
DESeq2/1.40.1 MatrixGenerics/1.12.2 snakecase/0.11.0
DEsingle/1.20.0 MatrixModels/0.5-1 snow/0.4-4
deSolve/1.35 matrixStats/1.0.0 SnowballC/0.7.1
destiny/3.14.0 maxLik/1.5-2 snowfall/1.84-6.2
devtools/2.4.5 maxstat/0.7-25 snpStats/1.50.0
DEWSeq/1.14.0 mclogit/0.9.6 softImpute/1.4-1
DEXSeq/1.46.0 mclust/6.0.0 som/0.3-5.1
dfidx/0.0-5 mcmc/0.9-7 SomaticSignatures/2.36.0
dfoptim/2020.10-1 MCMCpack/1.6-3 SoupX/1.6.2
diagram/1.6.5 MCMCprecision/0.4.0 sourcetools/0.1.7-1
DiagrammeR/1.0.9 mco/1.15.6 sp/2.1-1
dials/1.2.1 mda/0.5-3 /2.0-0 (202310)
/1.2.0 (202404) megadepth/1.10.0 spam/2.9-1
DiceDesign/1.9 MEGENA/1.3.7 sparkline/2.0
DiceKriging/1.6.0 memisc/0.99.31.6 SparseArray/1.2.2
dichromat/2.0-0.1 memoise/2.0.1 SparseM/1.81
DiffBind/3.10.0 memuse/4.2-3 sparseMatrixStats/1.12.1
diffcyt/1.20.0 metapod/1.8.0 sparsesvd/0.2-2
diffobj/0.3.5 metricsgraphics/0.9.0 spatial/7.3-16
diffusionMap/1.2.0 Mfuzz/2.60.0 SpatialExperiment/1.10.0
digest/0.6.32 mgcv/1.8-42 spatstat/3.0-6
dimRed/0.2.6 mgu74av2cdf/2.18.0 spatstat.data/3.0-1
diptest/0.76-0 mHMMbayes/0.2.0 spatstat.explore/3.2-1
dir.expiry/1.8.0 mice/3.15.0 spatstat.geom/3.2-1
DirichletMultinomial/1.42.0 micEcon/0.6-18 spatstat.linnet/3.1-1
distillery/1.2-1 microbenchmark/1.4.10 spatstat.model/3.2-4
distinct/1.12.2 miloR/1.8.1 spatstat.random/3.1-5
distr/2.9.2 mime/0.12 spatstat.sparse/3.0-2
distributional/0.3.2 miniUI/0.1.1.1 spatstat.utils/3.0-3
DistributionUtils/0.6-0 minpack.lm/1.2-3 spd/2.0-1
divo/1.0.1 minqa/1.2.5 speckle/1.0.0
dlm/1.1-6 mirbase.db/1.2.0 Spectra/1.10.3
DNAcopy/1.74.1 misc3d/0.9-1 Spectre/1.0.0
DNAshapeR/1.28.0 miscTools/0.6-28 speedglm/0.3-5
dnet/1.1.7 missForest/1.5 splancs/2.01-43
DO.db/2.9 missMDA/1.18 splots/1.66.0
docopt/0.7.1 mitools/2.4 spls/2.2-3
doFuture/1.0.1 mixOmics/6.24.0 SpotClean/1.7.1
doMC/1.3.8 mixsqp/0.3-48 SQUAREM/2021.1
doParallel/1.0.17 mixtools/2.0.0 sSeq/1.38.0
doRNG/1.8.6 MKmisc/1.9 stabledist/0.7-1
dorothea/1.12.0 mlapi/0.1.1 STACAS/2.1.3
DOSE/3.26.1 mlbench/2.1-3.1 StanHeaders/2.26.25
doSNOW/1.0.20 MLmetrics/1.1.1 stars/0.6-1
DOT/0.1 mlogit/1.1-1 startupmsg/0.9.6
dotCall64/1.0-2 mlr/2.19.1 STATegRa/1.36.0
DoubletFinder/2.0.3 mlrMBO/1.1.5.1 statmod/1.5.0
downlit/0.4.2 mnormt/2.1.1 statnet/2019.6
downloader/0.4 mockery/0.4.3 statnet.common/4.8.0
dowser/2.1.0 modeldata/1.3.0 stringdist/0.9.10
dplyr/1.1.4 /1.1.0 (202404) Stringendo/0.3.6
/1.1.2 (202404) modelenv/0.1.1 stringfish/0.15.7
dqrng/0.3.0 ModelMetrics/1.2.2.2 stringi/1.7.12
drc/3.0-1 modelr/0.1.11 stringr/1.5.0
DRIMSeq/1.28.0 modeltools/0.2-23 striprtf/0.5.3
DropletQC/0.0.0.9000 moe430acdf/2.18.0 strucchange/1.5-3
DropletUtils/1.20.0 moe430aprobe/2.18.0 styler/1.9.1
drosophila2probe/2.18.0 MOFA2/1.10.0 subselect/0.15.4
DRR/0.0.4 monocle/2.28.0 SummarizedExperiment/1.30.2
dsb/1.0.3 motifmatchr/1.22.0 superpc/1.12
DT/0.28 motifStack/1.44.1 SuppDists/1.1-9.7
dtplyr/1.3.1 mouse430a2cdf/2.18.0 supraHex/1.38.0
dtw/1.23-1 mouse430a2probe/2.18.0 survey/4.2-1
dygraphs/1.1.1.6 msa/1.32.0 survival/3.5-5
dynamicTreeCut/1.63-1 MsBackendMgf/1.8.0 survminer/0.4.9
DynDoc/1.78.0 MsCoreUtils/1.12.0 survMisc/0.5.6
dynlm/0.3-6 msigdbr/7.5.1 susieR/0.12.35
dynparam/1.0.2 MSnbase/2.26.0 sva/3.48.0
dynutils/1.0.11 muhaz/1.2.6.4 svDialogs/1.1.0
dynwrap/1.2.4 multcomp/1.4-23 svglite/2.1.1
e1071/1.7-13 multcompView/0.1-9 svGUI/1.0.1
earth/5.3.2 MultiAssayExperiment/1.26.0 svMisc/1.2.3
EBImage/4.42.0 multicool/0.1-12 svUnit/1.0.6
EBSeq/1.40.0 multiHiCcompare/1.18.0 SwissAir/1.1.5
Ecdat/0.4-2 multinichenetr/2.0.0 sylly/0.1-6
Ecfun/0.3-2 /1.0.3 (202404) synchronicity/1.3.5
Ecume/0.9.1 multipanelfigure/2.1.2 sys/3.4.2
edgeR/3.42.2 multtest/2.56.0 systemfit/1.1-30
effects/4.2-2 munsell/0.5.0 systemfonts/1.0.4
egg/0.4.5 muscat/1.14.0 systemPipeR/2.6.0
ellipse/0.4.5 MuSiC/1.0.0 systemPipeRdata/2.4.0
ellipsis/0.3.2 mutoss/0.1-13 tables/0.9.17
elliptic/1.4-0 mvoutlier/2.1.1 TCGAutils/1.20.0
emdbook/1.3.12 mvtnorm/1.1-3 tclust/1.5-4
emdist/0.3-2 mzID/1.38.0 TCseq/1.24.3
emmeans/1.8.6 mzR/2.34.1 TeachingDemos/2.12
emoa/0.5-0.1 N2R/1.0.1 tensor/1.5
EMT/1.3 nabor/0.5.0 tensorA/0.36.2
energy/1.7-11 NADA/1.6-1.1 tensorflow/2.11.0
EnhancedVolcano/1.18.0 naivebayes/0.9.7 tergm/4.1.1
enrichplot/1.20.0 naturalsort/0.1.3 terra/1.7-29
enrichR/3.2 NbClust/3.0.1 tester/0.1.7
EnsDb.Hsapiens.v79/2.99.0 NBPSeq/0.3.1 testthat/3.1.8
EnsDb.Hsapiens.v86/2.99.0 ncdf4/1.22 texreg/1.38.6
ensembldb/2.24.0 ncdfFlow/2.46.0 text2vec/0.6.3
entropy/1.3.1 Nebulosa/1.10.0 textshaping/0.3.7
EnvStats/2.8.1 network/1.18.1 /0.3.6 (202404)
Epi/2.47.1 networkD3/0.4 tfautograph/0.3.2
EpiDISH/2.16.0 networkDynamic/0.11.3 TFBSTools/1.38.0
erccdashboard/1.34.0 networkLite/1.0.5 TFisher/0.2.0
ergm/4.4.0 nichenetr/2.1.0 TFMPvalue/0.0.9
ergm.count/4.1.1 /2.0.4 (202404) tfruns/1.5.1
estimability/1.4.1 nleqslv/3.3.4 TH.data/1.1-2
etm/1.1.1 nlme/3.1-162 threejs/0.3.3
etrunct/0.1 nloptr/2.0.3 tibble/3.2.1
eulerr/7.0.0 NLP/0.2-1 tictoc/1.2
europepmc/0.4.1 nls2/0.3-3 tidygraph/1.2.3
evaluate/0.21 nlstools/2.0-0 tidymodels/1.2.0
evd/2.3-6.1 NMF/0.26 tidyr/1.3.1
evmix/2.12 NMOF/2.7-1 /1.3.0 (202404)
Exact/3.2 nnet/7.3-19 tidyselect/1.2.0
exactextractr/0.9.1 nnls/1.4 tidytext/0.4.1
exactRankTests/0.8-35 NOISeq/2.44.0 tidytree/0.4.2
exomeCopy/1.46.0 nor1mix/1.3-0 tidyverse/2.0.0
ExperimentHub/2.8.0 norm/1.0-11.1 tiff/0.1-11
expm/0.999-7 nortest/1.0-4 tigger/1.1.0
extraDistr/1.9.1 Nozzle.R1/1.1-1.1 timechange/0.2.0
extrafont/0.19 numbat/1.3.0 timeDate/4022.108
extrafontdb/1.0 numDeriv/2016.8-1.1 timeSeries/4021.105
extRemes/2.1-3 nycflights13/1.0.2 tinytex/0.45
factoextra/1.0.7 officer/0.6.2 tis/1.39
FactoMineR/2.8 oligo/1.64.1 tkrplot/0.0-27
fail/1.3 oligoClasses/1.62.0 tkWidgets/1.78.0
fANCOVA/0.6-1 openCyto/2.12.0 tm/0.7-13
fansi/1.0.4 OpenImageR/1.2.8 TMB/1.9.7
farver/2.1.1 openssl/2.0.6 /1.9.4 (202310)
fastcluster/1.2.3 openxlsx/4.2.5.2 tmvnsim/1.0-2
fastdigest/0.6-3 optextras/2019-12.4 tmvtnorm/1.6
fastDummies/1.6.3 optimx/2022-4.30 TOAST/1.14.0
fastICA/1.2-3 optparse/1.7.3 tokenizers/0.3.0
fastmap/1.1.1 orcutt/2.3 topGO/2.52.0
fastmatch/1.1-3 ordinal/2022.11-16 trackViewer/1.36.1
fBasics/4022.94 org.At.tair.db/3.17.0 tradeSeq/1.14.0
FD/1.0-12.1 org.Dm.eg.db/3.17.0 TrajectoryUtils/1.8.0
fda/6.0.5 org.Dr.eg.db/3.17.0 transport/0.13-0
FDb.InfiniumMethylation.hg19/2.2.0 org.Gg.eg.db/3.17.0 treeio/1.24.0
fdrtool/1.2.17 org.Hs.eg.db/3.17.0 triebeard/0.4.1
fds/1.8 org.Mm.eg.db/3.17.0 trimcluster/0.1-5
feather/0.3.5 org.Rn.eg.db/3.17.0 truncdist/1.0-2
ff/4.0.9 org.Sc.sgd.db/3.17.0 truncnorm/1.0-9
fftw/1.0-7 OrganismDbi/1.42.0 truncreg/0.2-5
fftwtools/0.9-11 orientlib/0.10.5 trust/0.1-8
fGarch/4022.89 orthopolynom/1.0-6.1 TSCAN/1.38.0
fgsea/1.26.0 osfr/0.2.9 tseries/0.10-54
fields/14.1 packrat/0.9.1 tsna/0.3.5
filelock/1.0.2 PAIRADISE/1.16.0 tsne/0.1-3.1
findpython/1.0.8 pak/0.7.2 TSP/1.2-4
fit.models/0.64 paletteer/1.5.0 TTR/0.24.3
fitdistrplus/1.1-11 palmerpenguins/0.1.1 tune/1.2.1
flashClust/1.01-2 pamr/1.56.1 /1.1.1 (202404)
flexdashboard/0.6.1 pan/1.6 tweeDEseqCountData/1.38.0
flexmix/2.3-19 pander/0.6.5 tweenr/2.0.2
float/0.3-1 parallelDist/0.2.6 TxDb.Celegans.UCSC.ce6.ensGene/3.2.2
flowAI/1.30.0 parallelly/1.36.0 TxDb.Dmelanogaster.UCSC.dm3.ensGene/3.2.2
flowAssist/0.0.0.9000 parallelMap/1.5.1 TxDb.Hsapiens.UCSC.hg18.knownGene/3.2.2
flowClust/3.38.0 ParamHelpers/1.14.1 TxDb.Hsapiens.UCSC.hg19.knownGene/3.2.2
flowCore/2.12.0 parsnip/1.2.1 TxDb.Hsapiens.UCSC.hg38.knownGene/3.17.0
FlowSOM/2.8.0 /1.1.0 (202404) TxDb.Mmusculus.UCSC.mm10.knownGene/3.10.0
flowStats/4.12.0 party/1.3-13 TxDb.Mmusculus.UCSC.mm9.knownGene/3.2.2
flowTrans/1.54.0 partykit/1.2-20 TxDb.Rnorvegicus.UCSC.rn4.ensGene/3.2.2
flowViz/1.64.0 pastecs/1.3.21 tximeta/1.18.0
flowWorkspace/4.12.0 patchwork/1.2.0 tximport/1.28.0
FNN/1.1.3.2 /1.1.2 (202404) tximportData/1.28.0
fontawesome/0.5.1 pathview/1.40.0 tzdb/0.4.0
fontBitstreamVera/0.1.1 pbapply/1.7-2 UCell/2.4.0
fontLiberation/0.1.0 pbdZMQ/0.3-9 ucminf/1.1-4.3
fontquiver/0.2.1 pbkrtest/0.5.2 umap/0.2.10.0
forcats/1.0.0 pbmcapply/1.5.1 unglue/0.1.0
foreach/1.5.2 pcaExplorer/2.26.1 units/0.8-2
forecast/8.21 pcaMethods/1.92.0 UpSetR/1.4.0
foreign/0.8-84 pcaPP/2.0-3 urca/1.3-3
formatR/1.14 PCAtools/2.12.0 urlchecker/1.0.1
formattable/0.2.1 pd.hugene.2.1.st/3.14.1 urltools/1.7.3
Formula/1.2-5 pd.mogene.2.0.st/3.14.1 uroot/2.1-2
fortunes/1.5-4 pdftools/3.3.3 useful/1.2.6
fpc/2.2-10 pdist/1.2.1 usethis/2.1.6
fracdiff/1.5-2 PeacoQC/1.10.0 utf8/1.2.3
fresh/0.2.0 penalized/0.9-52 uuid/1.1-0
fs/1.6.2 Peptides/2.4.5 uwot/0.1.15
fst/0.9.8 perm/1.0-0.2 V8/4.3.0
fstcore/0.9.14 permute/0.9-7 variancePartition/1.30.0
furrr/0.3.1 perry/0.3.1 VariantAnnotation/1.46.0
futile.logger/1.4.3 PFAM.db/3.17.0 vars/1.5-9
futile.options/1.0.1 phangorn/2.11.1 vcd/1.4-11
future/1.33.2 pheatmap/1.0.12 vcfR/1.14.0
/1.32.0 (202404) philentropy/0.7.0 vctrs/0.6.5
future.apply/1.11.0 phyclust/0.1-33 /0.6.3 (202404)
fuzzyjoin/0.1.6 phylobase/0.8.10 vdiffr/1.0.5
g3viz/1.1.5 phylotate/1.3 vegan/2.6-4
gage/2.50.0 pillar/1.9.0 velocyto.R/0.6
gageData/2.38.0 pinfsc50/1.2.0 venn/1.12
gam/1.22-2 pixmap/0.4-12 /1.11 (202404)
gamlss/5.4-12 pkgbuild/1.4.0 VennDiagram/1.7.3
gamlss.data/6.0-2 pkgconfig/2.0.3 verification/1.42
gamlss.dist/6.0-5 pkgdown/2.0.7 VGAM/1.1-8
gamm4/0.2-6 pkgload/1.3.2 VIM/6.2.2
gargle/1.5.1 PKI/0.1-12 vioplot/0.4.0
gbRd/0.4-11 plm/2.6-3 vip/0.4.1
gbutils/0.5 plogr/0.2.0 vipor/0.4.5
gclus/1.3.2 plot3D/1.4 viridis/0.6.3
gcrma/2.72.0 plotly/4.10.2 viridisLite/0.4.2
gdata/2.19.0 plotmo/3.6.2 visNetwork/2.1.2
gdtools/0.3.3 plotrix/3.8-2 vroom/1.6.3
geepack/1.3.9 pls/2.8-1 vsn/3.68.0
genefilter/1.82.1 plyr/1.8.8 waffle/1.0.2
geneLenDataBase/1.36.0 plyranges/1.20.0 waiter/0.2.5
GeneNet/1.2.16 PMCMRplus/1.9.6 waldo/0.5.1
geneplotter/1.78.0 png/0.1-8 warp/0.2.0
GeneralizedHyperbolic/0.8-4 poilog/0.4.2 waveslim/1.8.4
generics/0.1.3 poLCA/1.6.0.1 webshot/0.5.4
GENIE3/1.22.0 polspline/1.1.22 WGCNA/1.72-1
genomation/1.32.0 polyclip/1.10-4 whisker/0.4.1
GenomeInfoDb/1.36.1 polylabelr/0.2.0 whoami/1.3.0
GenomeInfoDbData/1.2.10 polynom/1.4-1 widgetTools/1.78.0
genomeIntervals/1.56.0 poorman/0.2.6 wiggleplotr/1.24.0
GenomicAlignments/1.36.0 posterior/1.4.1 withr/2.5.0
GenomicDataCommons/1.24.0 poweRlaw/0.70.6 wk/0.7.3
GenomicFeatures/1.52.1 powerTCR/1.20.0 workflows/1.1.4
GenomicRanges/1.52.0 prabclus/2.3-2 /1.1.3 (202404)
GenomicScores/2.12.0 pracma/2.4.2 workflowsets/1.1.0
GenSA/1.1.8 praise/1.0.0 writexl/1.4.2
geometry/0.4.7 precrec/0.14.2 WriteXLS/6.4.0
GEOquery/2.68.0 preprocessCore/1.62.1 wrMisc/1.15.2
geosphere/1.5-18 preseqR/4.0.0 xergm.common/1.7.8
gert/1.9.2 presto/1.0.0 xfun/0.39
getopt/1.20.3 prettyunits/1.1.1 xgboost/1.7.5.1
GetoptLong/1.0.5 primeviewprobe/2.18.0 xlsx/0.6.5
gfonts/0.2.0 princurve/2.1.6 xlsxjars/0.6.1
gg.gap/1.3 prismatic/1.1.1 XML/3.99-0.14
ggalluvial/0.12.5 pROC/1.18.2 xml2/1.3.4
GGally/2.1.2 processx/3.8.1 xmlparsedata/1.0.5
ggalt/0.4.0 prodlim/2023.03.31 xopen/1.0.0
ggbeeswarm/0.7.2 profileModel/0.6.1 xtable/1.8-4
ggbio/1.48.0 profvis/0.3.8 xts/0.13.1
ggbreak/0.1.2 progress/1.2.2 XVector/0.40.0
ggcorrplot/0.1.4 progressr/0.13.0 yaImpute/1.0-34
ggcyto/1.28.0 proj4/1.0-12 yaml/2.3.7
ggdendro/0.1.23 projpred/2.5.0 YAPSA/1.25.0
ggExpress/0.7.4 promises/1.2.0.1 yardstick/1.3.1
ggExtra/0.10.0 ProtGenerics/1.32.0 /1.2.0 (202404)
ggfittext/0.10.0 proto/1.0.0 yarrr/0.1.5
ggforce/0.4.1 proxy/0.4-27 yeast2.db/3.13.0
ggfortify/0.4.16 proxyC/0.3.3 yulab.utils/0.0.6
ggfun/0.1.4 pryr/0.1.6 zCompositions/1.4.0-1
/0.0.9 (202404) ps/1.7.5 zeallot/0.1.0
ggiraph/0.8.7 pscl/1.5.5.1 zinbwave/1.22.0
ggjoy/0.4.1 psych/2.3.3 zip/2.3.0
ggm/2.5 purrr/1.0.2 zlibbioc/1.46.0
ggmcmc/1.5.1.1 /1.0.1 (202404) zoo/1.8-12
ggnetwork/0.5.12 pvclust/2.2-0