R 4.6 packages -- generated 2026-05-07
Warning
Because R 4.6 is very new, then default for our R packages library will remain 4.5, until 4.6 is proven stable (or they release 4.6.1). Explicitly load R 4.6 to get these packages: module load R-base/4.6 R-cbrg. Please feedback any problems you discover.
Reproducibility
Older versions may be available in historic snapshots (run module avail R-cbrg for history).
See R-cbrg for details.
Changes (last 90 days)
2026-05-06: new: BloodGen3Module/1.20.0
2026-05-05: Creation. 1604 packages affected, click to view.
2026-05-05:
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new:
abind/1.4-8 acepack/1.6.3 ACME/2.68.0 ade4/1.7-24 adegraphics/1.0-22 admisc/0.40 AER/1.2-16 affxparser/1.84.0 affy/1.90.0 affyio/1.82.0 affyPLM/1.88.0 aggregation/1.0.1 airr/1.6.1 airway/1.31.0 aisdk/1.1.0 akima/0.6-3.6 alabaster.base/1.12.0 alabaster.matrix/1.12.0 alabaster.ranges/1.12.0 alabaster.sce/1.12.0 alabaster.schemas/1.12.0 alabaster.se/1.12.0 alakazam/1.4.3 ALL/1.53.0 amap/0.8-20 anndata/0.8.0 anndataR/1.2.0 annotate/1.90.0 AnnotationDbi/1.74.0 AnnotationFilter/1.36.0 AnnotationForge/1.54.0 AnnotationHub/4.2.0 AnVIL/1.24.0 AnVILBase/1.6.0 anytime/0.3.13 aod/1.3.3 apcluster/1.4.14 ape/5.8-1 apeglm/1.34.0 aplot/0.2.9 argparse/2.3.1 argparser/0.7.3 aricode/1.0.3 aroma.light/3.42.0 arrangements/1.1.10 arrow/24.0.0 ash/1.0-15 ashr/2.2-63 askpass/1.2.1 assertthat/0.2.1 assorthead/1.6.0 ATACseqQC/1.36.0 AUC/0.3.2 AUCell/1.34.0 aws.s3/0.3.22 aws.signature/0.6.0 babel/0.3-0 babelgene/22.9 babelwhale/1.2.0 backports/1.5.1 ballgown/2.43.0 bambu/3.14.0 Banksy/1.8.1 base64/2.0.2 base64enc/0.1-6 base64url/1.4 basilisk/1.24.0 basilisk.utils/1.24.0 BASS/1.3.1 batchelor/1.28.0 BatchJobs/1.10 batchtools/0.9.18 BayesFactor/0.9.12-4.8 bayesm/3.1-7 bayesplot/1.15.0 BayesSpace/1.22.0 BB/2026.1.0 BBmisc/1.13.1 bbmle/1.0.25.1 bbotk/1.10.0 bcellViper/1.47.0 BCRANK/1.74.0 bdsmatrix/1.3-7 beachmat/2.28.0 beadarray/2.62.0 BeadDataPackR/1.64.0 beanplot/1.3.1 BEDMatrix/2.0.4 bedr/1.1.5 beeswarm/0.4.0 betareg/3.2-4 BH/1.90.0-1 BiasedUrn/2.0.12 bibtex/0.5.2 bigD/0.3.1 biglm/0.9-3 bigmemory.sri/0.1.8 bindr/0.1.3 bindrcpp/0.2.4 binom/1.1-1.1 Biobase/2.72.0 BiocBaseUtils/1.14.0 BiocFileCache/3.2.0 BiocGenerics/0.58.0 BiocIO/1.22.0 biocmake/1.4.0 BiocManager/1.30.27 BiocNeighbors/2.6.0 BiocParallel/1.46.0 BiocSingular/1.28.0 BiocStyle/2.40.0 BiocVersion/3.23.1 biocViews/1.80.0 biomaRt/2.68.0 Biostrings/2.80.0 biovizBase/1.60.0 BiSeq/1.52.0 bit/4.6.0 bit64/4.8.0 bitops/1.0-9 blme/1.0-7 blob/1.3.0 blockmodeling/1.1.8 bluster/1.22.0 BMA/3.18.21 bmp/0.3.1 bnbc/1.34.0 bookdown/0.46 boot/1.3-32 Boruta/9.0.0 BradleyTerry2/1.1.3 brew/1.0-10 brglm/0.7.3 bridgesampling/1.2-1 brio/1.1.5 brms/2.23.0 Brobdingnag/1.2-9 broom/1.0.12 broom.helpers/1.22.0 BSgenome/1.80.0 BSgenome.Hsapiens.UCSC.hg19/1.4.3 bslib/0.10.0 BulkSignalR/1.4.0 bumphunter/1.54.0 BumpyMatrix/1.20.0 BUSpaRse/1.26.0 BWStest/0.2.3 ca/0.71.1 cachem/1.1.0 Cairo/1.7-0 calibrate/1.7.7 callr/3.7.6 car/3.1-5 card/0.1.1 carData/3.0-6 cards/0.7.1 cardx/0.3.2 caret/7.0-1 carrier/0.3.0.4 CATALYST/1.36.0 Category/2.78.0 caTools/1.18.3 cBioPortalData/2.24.0 cccd/1.6 ccRemover/1.0.4 celda/1.28.0 CellBench/1.28.0 celldex/1.21.0 cellranger/1.1.0 Cepo/1.18.0 CGHbase/1.72.0 CGHregions/1.70.0 changepoint/2.3 checkmate/2.3.4 chemometrics/1.4.4 chipenrich.data/2.35.0 ChIPpeakAnno/3.46.0 ChIPseeker/1.48.0 chipseq/1.62.0 chron/2.3-62 cigarillo/1.2.0 circlize/0.4.18 CircStats/0.2-7 class/7.3-23 ClassifyR/3.16.0 classInt/0.4-11 cli/3.6.6 clipr/0.8.0 clisymbols/1.2.0 clock/0.7.4 clue/0.3-68 cluster/2.1.8.2 ClusterFoldSimilarity/1.8.0 clusterGeneration/1.3.8 clusterProfiler/4.20.0 ClusterR/1.3.6 clustifyr/1.24.0 clustree/0.5.1 cmdfun/1.0.2 cmprsk/2.2-12 cn.mops/1.58.0 CNEr/1.48.0 coda/0.19-4.1 codetools/0.2-20 coin/1.4-3 collapse/2.1.6 collections/0.3.12 coloc/5.2.3 colorRamp2/0.1.1 colorRamps/2.3.4 colorspace/2.1-2 colourpicker/1.3.0 combinat/0.0-8 commonmark/2.0.0 ComplexHeatmap/2.28.0 compositions/2.0-9 CompQuadForm/1.4.4 concaveman/1.2.0 condiments/1.20.0 config/0.3.2 conflicted/1.2.0 conos/1.5.4 conquer/1.3.3 ConsensusClusterPlus/1.76.0 contfrac/1.1-12 convert/1.88.0 coRanking/0.2.5 corpcor/1.6.10 corrplot/0.95 corrr/0.4.5 covr/3.6.5 cowplot/1.2.0 coxme/2.2-22 cpp11/0.5.4 crayon/1.5.3 credentials/2.0.3 crew/1.3.0 crochet/2.3.0 crossmap/0.5.0 crosstalk/1.2.2 crul/1.6.0 cubature/2.1.4-1 Cubist/0.6.0 curl/7.1.0 cvar/0.6 cvAUC/1.1.4 CVST/0.2-3 cvTools/0.3.3 cyclocomp/1.1.2 CytoDx/1.32.0 cytolib/2.24.0 cytomapper/1.24.0 CytoML/2.24.0 data.table/1.18.2.1 data.tree/1.2.0 DataEditR/1.0.0 DBI/1.3.0 DBItest/1.8.2 dbplyr/2.5.2 dbscan/1.2.4 dcanr/1.28.0 ddalpha/1.3.16 DDRTree/0.1.6 deal/1.2-42 debugme/1.2.0 declared/0.26 decontX/1.10.0 decoupleR/2.17.0 deepSNV/1.58.0 DEGreport/1.48.0 DEGseq/1.66.0 Delaporte/8.4.3 DelayedArray/0.38.1 DelayedMatrixStats/1.34.0 deldir/2.0-4 demuxmix/1.14.0 dendextend/1.19.1 dendsort/0.3.4 densEstBayes/1.0-2.2 densityClust/0.3.3 densvis/1.22.0 DEoptimR/1.1-4 Deriv/4.2.0 desc/1.4.3 descr/1.1.9 DescTools/0.99.60 DESeq2/1.52.0 DEsingle/1.32.0 deSolve/1.42 destiny/3.26.0 devtools/2.5.2 DEWSeq/1.26.0 DEXSeq/1.58.0 dfidx/0.2-0 dfoptim/2023.1.0 diagram/1.6.5 DiagrammeR/1.0.12 dials/1.4.3 DiceDesign/1.10 DiceKriging/1.6.1 dichromat/2.0-0.1 DiffBind/3.22.1 diffcyt/1.32.0 diffobj/0.3.6 diffusionMap/1.2.0 digest/0.6.39 dimRed/0.2.7 diptest/0.77-2 dir.expiry/1.20.0 DirichletMultinomial/1.54.0 DirichletReg/0.7-2 distillery/1.2-2 distinct/1.24.0 distr/2.9.7 distributional/0.7.0 DistributionUtils/0.6-2 dittoSeq/1.24.0 divo/1.0.2 dlm/1.1-6.1 DNAcopy/1.86.0 DNAshapeR/1.40.0 doBy/4.7.1 docopt/0.7.2 doFuture/1.2.1 doMC/1.3.8 doParallel/1.0.17 doRNG/1.8.6.3 dorothea/1.23.0 DOSE/4.6.0 doSNOW/1.0.20 dotCall64/1.2 downlit/0.4.5 downloader/0.4.1 dowser/2.4.1 dplyr/1.2.1 dqrng/0.4.1 drat/0.2.5 drc/3.0-1 DRIMSeq/1.40.0 DropletUtils/1.32.0 DRR/0.0.4 dsb/2.0.1 DT/0.34.0 dtplyr/1.3.3 dtw/1.23-2 duckdb/1.5.2 duckplyr/1.2.1 DWLS/0.1.0 dygraphs/1.1.1.6 dynamicTreeCut/1.63-1 DynDoc/1.90.0 dynlm/0.3-6 dynparam/1.0.2 dynutils/1.0.12 dynwrap/1.3.0 e1071/1.7-17 earth/5.3.5 easy.utils/0.1.0 EBImage/4.54.0 EBSeq/2.10.0 Ecdat/0.4.7 Ecfun/0.4.0 Ecume/0.9.2 EDASeq/2.46.0 edgeR/4.10.0 eds/1.14.0 effects/4.2-5 egg/0.4.5 EGSEA/1.40.0 EGSEAdata/1.39.0 ellipse/0.5.0 ellipsis/0.3.3 elliptic/1.5-1 emdbook/1.3.14 emdist/0.3-3 emmeans/2.0.3 emoa/0.5-3 EMT/1.3.2 energy/1.7-12 EnhancedVolcano/1.30.0 enrichit/0.1.4 enrichplot/1.32.0 enrichR/3.4 ensembldb/2.36.0 entropy/1.3.2 EnvStats/3.1.0 Epi/2.65 EpiDISH/2.28.0 erccdashboard/1.46.0 ergm/4.12.0 ergm.count/4.1.3 ergm.multi/0.3.0 escape/2.8.0 escheR/1.12.0 estimability/1.5.1 etm/1.1.2 etrunct/0.1 eulerr/7.1.0 europepmc/0.4.3 evaluate/1.0.5 evd/2.3-7.1 evmix/2.12 Exact/3.3 exactextractr/0.10.1 exactRankTests/0.8-37 ExperimentHub/3.2.0 expm/1.0-0 extraDistr/1.10.0.3 extrafont/0.20 extrafontdb/1.1 extRemes/2.2-1 factoextra/2.0.0 FactoMineR/2.14 fail/1.3 fANCOVA/0.6-1 fansi/1.0.7 farver/2.1.2 fastcluster/1.3.0 fastDummies/1.7.6 fastICA/1.2-7 fastmap/1.2.0 fastmatch/1.1-8 fastmatrix/0.6-6 fBasics/4052.98 FD/1.0-12.5 fda/6.3.0 fdrtool/1.2.18 fds/1.9 feather/0.4.0 ff/4.5.2 fftw/1.0-9 fftwtools/0.9-11 fGarch/4052.93 fgsea/1.38.0 fields/17.3 filelock/1.0.3 findpython/1.0.9 fit.models/0.64 fitdistrplus/1.2-6 FLAMES/2.6.0 flashClust/1.1-4 flexdashboard/0.6.3 flexmix/2.3-20 float/0.3-3 flowAI/1.42.0 flowClust/3.50.0 flowCore/2.24.0 FlowSOM/2.20.0 flowStats/4.24.0 flowTrans/1.64.0 flowViz/1.76.0 flowWorkspace/4.24.0 FNN/1.1.4.1 fontawesome/0.5.3 fontBitstreamVera/0.1.1 fontLiberation/0.1.0 fontquiver/0.2.1 forcats/1.0.1 foreach/1.5.2 forecast/9.0.2 foreign/0.8-91 formatR/1.14 formattable/0.2.1 Formula/1.2-5 fortunes/1.5-4 fpc/2.2-14 fracdiff/1.5-4 fresh/0.2.2 fs/2.1.0 fst/0.9.8 fstcore/0.10.0 furrr/0.4.0 futile.logger/1.4.9 futile.options/1.0.1 future/1.70.0 future.apply/1.20.2 fuzzyjoin/0.1.8 gage/2.62.0 gageData/2.49.0 gam/1.22-7 gamlss/5.5-0 gamlss.data/6.0-7 gamlss.dist/6.1-1 gamm4/0.2-7 gargle/1.6.1 GauPro/0.2.17 gbRd/0.4.12 gbutils/0.5.1 gcatest/2.12.0 gclus/1.3.3 GCPtools/1.2.0 gcrma/2.84.0 gdata/3.0.1 gdtools/0.5.0 geepack/1.3.13 genefilter/1.94.0 geneLenDataBase/1.47.0 GeneNet/1.2.17 GeneOverlap/1.48.0 geneplotter/1.90.0 GeneralizedHyperbolic/0.8-7 generics/0.1.4 GENIE3/1.34.0 genio/1.1.2 genomation/1.44.0 GenomeInfoDb/1.48.0 genomeIntervals/1.68.0 GenomicAlignments/1.48.0 GenomicDataCommons/1.36.0 GenomicFeatures/1.64.0 GenomicPlot/1.10.0 GenomicRanges/1.64.0 GenomicScores/2.24.0 GenSA/1.1.15 geojsonR/1.1.2 geometry/0.5.2 GEOquery/2.80.0 geosphere/1.6-8 gert/2.3.1 getopt/1.21.1 GetoptLong/1.1.1 gfonts/0.2.0 gg.gap/1.3 ggalluvial/0.12.6 GGally/2.4.0 ggbeeswarm/0.7.3 ggbio/1.60.0 ggbreak/0.1.7 ggcorrplot/0.1.4.1 ggcyto/1.40.0 ggdendro/0.2.0 ggdist/3.3.3 ggExtra/0.11.0 ggfittext/0.10.3 ggforce/0.5.0 ggfortify/0.4.19 ggfun/0.2.0 ggh4x/0.3.1 ggiraph/0.9.6 ggm/2.5.2 ggmcmc/1.5.1.2 ggnetwork/0.5.14 ggnewscale/0.5.2 ggplot.multistats/1.0.1 ggplot2/4.0.3 ggplot2movies/0.0.1 ggplotify/0.1.3 ggpointdensity/0.2.1 ggpolypath/0.4.0 ggprism/1.0.7 ggpubr/0.6.3 ggraph/2.2.2 ggrastr/1.0.2 ggrepel/0.9.8 ggridges/0.5.7 ggsci/5.0.0 ggseqlogo/0.2.2 ggsignif/0.6.4 ggstance/0.3.7 ggstats/0.13.0 ggtangle/0.1.2 ggtext/0.1.2 ggthemes/5.2.0 ggtrace/0.2.0 ggtree/4.2.0 ggupset/0.4.1 ggVennDiagram/1.5.7 gh/1.5.0 GIGrvg/0.8 git2r/0.36.2 gitcreds/0.1.2 gld/2.6.8 glmGamPoi/1.24.0 glmmSeq/0.5.7 glmmTMB/1.1.14 glmnet/5.0 glmpath/0.98 glmpca/0.2.0 GlobalOptions/0.1.4 globals/0.19.1 globaltest/5.66.0 glue/1.8.1 gmm/1.9-1 gmodels/2.19.1 gmp/0.7-5.1 GO.db/3.23.1 goftest/1.2-3 googledrive/2.1.2 googlesheets4/1.1.2 googleVis/0.7.3 GOSemSim/2.38.0 goseq/1.64.0 GOstats/2.78.0 goTools/1.86.0 gower/1.0.2 GPArotation/2026.4-1 GPfit/1.0-9 gplots/3.3.0 gProfileR/0.7.0 gprofiler2/0.2.4 graph/1.90.0 graphite/1.58.0 graphlayouts/1.2.3 GreyListChIP/1.44.0 gridBase/0.4-7 gridExtra/2.3 gridGraphics/0.5-1 gridtext/0.1.6 grImport/0.9-7 grImport2/0.3-3 GSA/1.03.3 gsalib/2.2.1 GSEABase/1.74.0 gsignal/0.3-7 gsl/2.1-9 gson/0.1.0 gss/2.2-10 gsubfn/0.7 GSVA/2.6.0 GSVAdata/1.47.3 gt/1.3.0 gtable/0.3.6 gtools/3.9.5 gtrellis/1.44.0 gtsummary/2.5.0 Gviz/1.56.0 gypsum/1.8.0 h2o/3.44.0.3 h5mread/1.4.0 hahmmr/1.0.0 hardhat/1.4.3 HardyWeinberg/1.7.9 harmony/2.0.2 hash/2.2.6.4 haven/2.5.5 HDF5Array/1.40.0 hdf5r/1.3.12 hdf5r.Extra/0.1.0 hdrcde/3.5.0 heatmap3/1.1.9 heatmaply/1.6.0 here/1.0.2 hexbin/1.28.5 HGNChelper/0.8.15 hgu133a.db/3.13.0 hgu133plus2.db/3.13.0 HiCBricks/1.29.0 HiCcompare/1.34.0 HiddenMarkov/1.8-14 highcharter/0.9.5 HighFive/3.3.0 highlight/0.5.2 highr/0.12 Hmisc/5.2-5 HMMcopy/1.54.0 hms/1.1.4 homologene/1.4.68.19.3.27 hopach/2.72.0 HSMMSingleCell/1.31.0 htmlTable/2.5.0 htmltools/0.5.9 HTMLUtils/0.1.9 htmlwidgets/1.6.4 httpcode/0.3.0 httpuv/1.6.17 httr/1.4.8 httr2/1.2.2 hwriter/1.3.2.1 hypergeo/1.2-14 hypergraph/1.84.0 ica/1.0-3 IDPmisc/1.1.21 idr/1.3 ids/1.0.1 igraph/2.3.1 IHW/1.40.0 illuminaio/0.54.0 immApex/1.6.0 immReferent/1.0.0 immunarch/0.10.3 immundata/0.0.7 impute/1.86.0 ineq/0.2-13 iNEXT/3.0.2 infer/1.1.0 infinityFlow/1.22.0 inflection/1.3.7 influenceR/0.1.5 infotheo/1.2.0.1 ini/0.3.1 inline/0.3.21 insight/1.5.0 instantiate/0.2.3 InteractionSet/1.40.0 intergraph/2.0-4 interp/1.1-6 intervals/0.15.5 intrinsicDimension/1.2.0 inum/1.0-5 invgamma/1.2 ipred/0.9-15 IRanges/2.46.0 IRdisplay/1.1 IRkernel/1.3.2 irlba/2.3.7 iSEE/2.24.0 Iso/0.0-21 isoband/0.3.0 IsoformSwitchAnalyzeR/2.12.0 isotone/1.1-2 ISwR/2.0-11 iterators/1.0.14 iterpc/0.4.2 itertools/0.1-3 jackstraw/1.3.21 janeaustenr/1.0.0 janitor/2.2.1 JASPAR2014/1.47.0 jcolors/0.0.5 job/0.3.1 jomo/2.7-6 jose/2.0.0 jpeg/0.1-11 jquerylib/0.1.4 jsonlite/2.0.0 jsonvalidate/1.5.0 juicyjuice/0.1.0 kableExtra/1.4.0 KEGGdzPathwaysGEO/1.49.0 KEGGgraph/1.72.0 KEGGREST/1.52.0 Kendall/2.2.2 keras/2.16.1 kernlab/0.9-33 KernSmooth/2.23-26 keyring/1.4.1 klaR/1.7-4 km.ci/0.5-6 KMsurv/0.1-6 knitr/1.51 knn.covertree/1.1 kohonen/3.0.13 koRpus/0.13-9 ks/1.15.1 kSamples/1.2-12 L1pack/0.62-4 label.switching/1.8 labeling/0.4.3 labelled/2.16.0 laeken/0.5.3 Lahman/14.0-0 lambda.r/1.2.4 languageserver/0.3.18 LaplacesDemon/16.1.8 lars/1.3 later/1.4.8 lattice/0.22-9 latticeExtra/0.6-31 lava/1.9.0 lazyeval/0.2.3 lbfgs/1.2.1.2 lda/1.5.2 leaps/3.2 LearnBayes/2.15.2 leiden/0.4.3.1 leidenAlg/1.1.7 leidenbase/0.1.36 lfa/2.12.0 lfe/3.1.1 lgr/0.5.2 lhs/1.3.0 libcoin/1.0-12 lifecycle/1.0.5 lightgbm/4.6.0 limma/3.68.1 limmaGUI/1.88.0 limSolve/2.0.1 LinkedMatrix/1.4.0 linprog/0.9-6 lintr/3.3.0-1 listenv/0.10.1 listviewer/4.0.0 litedown/0.9 littler/0.3.23 lmds/0.1.0 lme4/2.0-1 lmerTest/3.2-1 lmodel2/1.7-4 lmom/3.3 Lmoments/1.3-2 lmtest/0.9-40 lobstr/1.2.1 locfdr/1.1-8 locfit/1.5-9.12 logger/0.4.1 logging/0.10-108 lokern/1.1-12 longitudinal/1.1.13 longmemo/1.1-4 loo/2.9.0 lpSolve/5.6.23 lpSolveAPI/5.5.2.0-17.15 lpsymphony/1.40.0 lsa/0.73.4 LSD/4.1-0 lsmeans/2.30-2 lubridate/1.9.5 lwgeom/0.2-16 LymphoSeq/1.40.0 LymphoSeqDB/0.99.2 M3Drop/1.38.0 magic/1.6-1 magick/2.9.1 magrittr/2.0.5 manipulate/1.0.1 manipulateWidget/0.11.2 mapproj/1.2.12 maps/3.4.3 markdown/2.0 marray/1.90.0 maSigPro/1.84.0 MASS/7.3-65 MAST/1.38.0 mathjaxr/2.0-0 matlab/1.0.4.1 Matrix/1.7-5 matrixcalc/1.0-6 MatrixEQTL/2.3 MatrixExtra/0.1.15 MatrixGenerics/1.24.0 MatrixModels/0.5-4 matrixStats/1.5.0 matrixTests/0.2.3.1 maxLik/1.5-2.2 maxstat/0.7-26 mclogit/0.9.15 mclust/6.1.2 mcmc/0.9-8 MCMCpack/1.7-1 MCMCprecision/0.4.2 mco/1.17 mcprogress/0.1.1 mda/0.5-5 megadepth/1.22.0 memisc/0.99.31.8.3 memoise/2.0.1 memuse/4.2-3 MetaboCoreUtils/1.20.1 metaboliteIDmapping/1.0.0 metadat/1.6-0 metafor/5.0-1 metap/1.14 metapod/1.20.0 Mfuzz/2.72.0 mgcv/1.9-4 mHMMbayes/1.1.1 mice/3.19.0 micEcon/0.6-20 microbenchmark/1.5.0 miloR/2.7.2 mime/0.13 miniUI/0.1.2 minpack.lm/1.2-4 minqa/1.2.8 mirai/2.6.1 misc3d/0.9-2 miscTools/0.6-30 missMDA/1.21 mitml/0.4-5 mitools/2.4 mixOmics/6.36.0 mixopt/0.1.3 mixsqp/0.3-54 mixtools/2.0.0.1 mlapi/0.1.1 mlbench/2.1-8 MLmetrics/1.1.3 mlogit/1.1-3 mlr/2.19.3 mlr3/1.6.0 mlr3learners/0.14.0 mlr3measures/1.3.0 mlr3misc/0.21.0 mlr3pipelines/0.11.0 mlr3tuning/1.6.0 mlrMBO/1.1.6 mmand/1.7.0 mnormt/2.1.2 mockery/0.4.5 modeldata/1.5.1 modelenv/0.2.0 ModelMetrics/1.2.2.2 modelr/0.1.11 modeltools/0.2-24 MOFA2/1.22.0 monocle/2.40.0 mosdef/1.8.0 motifmatchr/1.34.0 motifStack/1.56.0 MouseGastrulationData/1.25.0 msa/1.44.0 MsBackendMgf/1.20.0 MsCoreUtils/1.24.0 msigdb/1.19.0 msigdbr/26.1.0 muhaz/1.2.6.4 multcomp/1.4-30 multcompView/0.1-11 MultiAssayExperiment/1.38.0 multicool/1.0.1 multiGSEA/1.22.0 multipanelfigure/2.1.6 multitaper/1.0-17 multtest/2.68.0 munsell/0.5.1 muscat/1.26.0 mutoss/0.1-14 mvoutlier/2.1.4 mvtnorm/1.3-7 N2R/1.0.5 nabor/0.5.0 NADA/1.6-1.2 naivebayes/1.0.0 nanoarrow/0.8.0 nanonext/1.9.0 naturalsort/0.1.3 NbClust/3.0.1 NBPSeq/0.3.1 ncdfFlow/2.58.0 Nebulosa/1.22.0 network/1.20.0 networkD3/0.4.1 networkDynamic/0.12.0 networkLite/1.1.0 nleqslv/3.3.7 nlme/3.1-169 nloptr/2.2.1 NLP/0.3-2 nls2/0.3-4 nlstools/2.1-0 NMF/0.28 NMOF/2.11-0 nnet/7.3-20 nnls/1.6 NOISeq/2.56.0 nor1mix/1.3-3 nortest/1.0-4 numbat/1.5.2 numDeriv/2016.8-1.1 nycflights13/1.0.2 officer/0.7.4 oligo/1.76.0 oligoClasses/1.74.0 oompaBase/3.2.11 oompaData/3.1.5 openCyto/2.24.0 OpenImageR/1.3.0 openssl/2.4.0 openxlsx/4.2.8.1 optextras/2019-12.4 optimx/2025-4.9 optparse/1.8.2 ordinal/2025.12-29 org.Hs.eg.db/3.23.1 org.Mm.eg.db/3.23.0 org.Rn.eg.db/3.23.0 OrganismDbi/1.54.0 orientlib/0.10.5 orthogene/1.18.1 orthopolynom/1.0-6.1 osfr/0.2.9 otel/0.2.0 packrat/0.9.3 PADOG/1.54.0 pagoda2/1.0.15 PAIRADISE/1.28.0 pak/0.9.5 paletteer/1.7.0 palmerpenguins/0.1.1 pals/1.10 pamr/1.57 pan/1.9 pander/0.6.6 paradox/1.0.1 parallelDist/0.2.7 parallelly/1.47.0 parallelMap/1.5.1 ParamHelpers/1.14.2 parsnip/1.5.0 party/1.3-20 partykit/1.2-27 pastecs/1.4.2 patchwork/1.3.2 pathview/1.52.0 pbapply/1.7-4 pbdZMQ/0.3-14 pbkrtest/0.5.5 pbmcapply/1.5.1 pcaExplorer/3.6.0 pcaMethods/2.4.0 pcaPP/2.0-5 PCAtools/2.24.0 pdftools/3.8.0 pdist/1.2.1 PeacoQC/1.22.0 penalized/0.9-53 Peptides/2.4.6 perm/1.0-0.4 permute/0.9-10 perry/0.3.1 pfamAnalyzeR/1.12.0 phangorn/2.12.1 pheatmap/1.0.13 philentropy/0.10.0 phyclust/0.1-34 phylobase/0.8.12 phylotate/1.3 pillar/1.11.1 pinfsc50/1.3.0 pixmap/0.4-14 pkgbuild/1.4.8 pkgconfig/2.0.3 pkgdown/2.2.0 pkgload/1.5.2 PKI/0.1-15 plm/2.6-7 plot3D/1.4.2 plotly/4.12.0 plotmo/3.7.0 plotrix/3.8-14 pls/2.9-0 plyr/1.8.9 plyranges/1.32.0 PMCMRplus/1.9.12 png/0.1-9 poilog/0.4.2.1 poLCA/1.6.0.2 polspline/1.1.25 Polychrome/1.5.4 polyclip/1.10-7 polylabelr/1.0.0 polynom/1.4-1 poorman/0.2.7 posterior/1.7.0 poweRlaw/1.0.0 powerTCR/1.32.0 prabclus/2.3-5 pracma/2.4.6 praise/1.0.0 precrec/0.14.5 preprocessCore/1.74.0 preseqR/4.0.0 prettyunits/1.2.0 princurve/2.1.6 prismatic/1.1.2 pROC/1.19.0.1 processx/3.9.0 prodlim/2026.03.11 profileModel/0.6.2 profvis/0.4.0 progress/1.2.3 progressr/0.19.0 proj4/1.0-15 projpred/2.10.0 promises/1.5.0 ProtGenerics/1.44.0 proto/1.0.0 proxy/0.4-29 proxyC/0.5.2 PRROC/1.4 ps/1.9.3 pscl/1.5.9 psych/2.6.3 purrr/1.2.2 pvclust/2.2-0 pwalign/1.8.0 pwr/1.3-0 qap/0.1-2 QCA/3.24 qlcMatrix/0.9.9 qpdf/1.4.1 qqconf/1.3.2 qqman/0.1.9 qs2/0.2.1 quadprog/1.5-8 quantmod/0.4.28 quantreg/6.1 questionr/0.8.2 QuickJSR/1.9.2 qusage/2.46.0 qvalue/2.44.0 qvcalc/1.0.4 R.cache/0.17.0 R.devices/2.17.3 R.matlab/3.7.0 R.methodsS3/1.8.2 R.oo/1.27.1 R.rsp/0.46.0 R.utils/2.13.0 R2HTML/2.3.4 R4RNA/1.40.0 R6/2.6.1 ragg/1.5.2 RaggedExperiment/1.36.0 rainbow/3.8 randomcoloR/1.1.0.1 randomForest/4.7-1.2 randomForestSRC/3.6.2 ranger/0.18.0 RANN/2.6.2 rapiclient/0.1.8 RApiSerialize/0.1.4 rappdirs/0.3.4 rARPACK/0.11-0 raster/3.6-32 RBGL/1.88.0 rbibutils/2.4.1 RCAS/1.38.0 RCircos/1.2.2 rcmdcheck/1.4.0 RColorBrewer/1.1-3 Rcpp/1.1.1-1.1 RcppAnnoy/0.0.23 RcppArmadillo/15.2.6-1 RcppDist/0.1.1.1 RcppEigen/0.3.4.0.2 RcppGSL/0.3.14 RcppHNSW/0.6.0 RcppHungarian/0.3 RcppML/0.3.7.1 RcppNumerical/0.7-0 RcppParallel/5.1.11-2 RcppPlanc/2.0.15 RcppProgress/0.4.2 RcppRoll/0.3.2 RcppSpdlog/0.0.28 RcppThread/2.3.0 RcppTOML/0.2.3 RcppZiggurat/0.1.8 RCurl/1.98-1.18 Rdpack/2.6.6 reactable/0.4.5 reactome.db/1.96.0 ReactomeGSA/1.25.1 ReactomePA/1.56.0 reactR/0.6.1 readbitmap/0.1.5 readr/2.2.0 readxl/1.4.5 recipes/1.3.2 RefManageR/1.4.0 reformulas/0.4.4 regioneR/1.44.0 registry/0.5-1 relations/0.6-17 reldist/1.7-2 rem/1.3.1 remaCor/0.0.20 rematch/2.0.0 rematch2/2.1.2 remotes/2.5.0 rentrez/1.2.4 renv/1.2.2 repmis/0.5.1 repr/1.1.7 reprex/2.1.1 reshape/0.8.10 reshape2/1.4.5 ResidualMatrix/1.22.0 restfulr/0.0.16 reticulate/1.46.0 rex/1.2.2 Rfast/2.1.5.2 Rfast2/0.1.5.6 rgl/1.3.36 Rgraphviz/2.56.0 rhandsontable/0.3.8 rhdf5/2.56.0 rhdf5filters/1.24.0 Rhdf5lib/2.0.0 RhpcBLASctl/0.23-42 Rhtslib/3.8.0 Rigraphlib/1.4.0 RInside/0.2.19 rintrojs/0.3.4 rio/1.3.0 rJava/1.0-18 rjson/0.2.23 RJSONIO/2.0.0 rlang/1.2.0 rle/0.10.0 rlecuyer/0.3-8 rliger/2.2.1 rlist/0.4.6.2 RMariaDB/1.3.5 rmarkdown/2.31 rmdformats/1.0.4 rmeta/3.0 Rmisc/1.5.1 Rmpfr/1.1-2 RMTstat/0.3.1 rmutil/1.1.10 RMySQL/0.11.3 Rnanoflann/0.0.3 rncl/0.8.9 RNeXML/2.4.11 rngtools/1.5.2 robCompositions/2.4.2 robust/0.7-5 robustbase/0.99-7 robustHD/0.8.4 ROCR/1.0-12 Rook/1.2 rootSolve/1.8.2.4 roptim/0.1.7 ROTS/2.4.0 roxygen2/8.0.0 rpart/4.1.27 rpart.plot/3.1.4 rprojroot/2.1.1 RProtoBufLib/2.24.0 rrcov/1.7-7 rsample/1.3.2 Rsamtools/2.28.0 RSclient/0.7-12 rsconnect/1.8.0 Rserve/1.8-19 Rsolnp/2.0.1 rsparse/0.5.3 RSpectra/0.16-2 RSQLite/2.4.6 rstan/2.32.7 rstanarm/2.32.2 rstantools/2.6.0 rstatix/0.7.3 rstudioapi/0.18.0 Rsubread/2.26.0 rsvd/1.0.5 rsvg/2.7.0 RTCGA/1.41.0 RTCGAToolbox/2.42.0 rtracklayer/1.72.0 Rtsne/0.17 Rttf2pt1/1.3.14 rugarch/1.5-5 RUnit/0.4.33.1 ruv/0.9.7.1 RUVSeq/1.46.0 rvcheck/0.2.1 rversions/3.0.0 rvest/1.0.5 rvg/0.4.2 Rwave/2.6-5 rworldmap/1.3-8 rzmq/0.9.16 s2/1.1.9 S4Arrays/1.12.0 S4Vectors/0.50.0 S7/0.2.2 safe/3.52.1 sampleSelection/1.2-14 samr/3.0.1 sandwich/3.1-1 sass/0.4.10 satuRn/1.20.0 SAVER/1.1.2 SC3/1.40.0 ScaledMatrix/1.20.0 scales/1.4.0 scam/1.2-22 scater/1.40.0 scattermore/1.2 scatterpie/0.2.6 scatterplot3d/0.3-45 scClassify/1.24.0 sccomp/2.4.0 sccore/1.0.7 scCustomize/3.2.4 scDblFinder/1.26.0 scde/2.40.0 scds/2.0.0 scistreer/1.2.1 SciViews/0.9-13.2 scMerge/1.28.0 scoper/1.4.0 SCpubr/3.0.1 scran/1.40.0 scrapper/1.6.1 scRecover/1.28.0 scRepertoire/2.8.0 scrime/1.3.7 scRNAseq/2.25.0 scry/1.24.0 sctransform/0.4.3 scuttle/1.22.0 segmented/2.2-1 selectr/0.5-1 sendmailR/1.4-1 Seqinfo/1.2.0 seqinr/4.2-44 seqLogo/1.78.0 seqPattern/1.44.0 seriation/1.5.8 sessioninfo/1.2.3 setRNG/2024.2-1 sets/1.0-25 Seurat/5.5.0 SeuratObject/5.4.0 sf/1.1-0 sfd/0.1.0 sfsmisc/1.1-23 sgeostat/1.0-27 shades/1.4.0 shadowtext/0.1.6 shape/1.4.6.1 shazam/1.3.2 shiny/1.13.0 shinyAce/0.4.4 shinyalert/3.1.0 shinyBS/0.65.0 shinycssloaders/1.1.0 shinydashboard/0.7.3 shinydashboardPlus/2.0.6 shinyFiles/0.9.3 shinyhelper/0.3.2 shinyjs/2.1.1 shinystan/2.7.0 shinythemes/1.2.0 shinyTree/0.3.1 shinyWidgets/0.9.1 ShortRead/1.70.0 siggenes/1.86.0 Signac/1.17.1 SIMLR/1.38.0 simona/1.10.0 simpleSeg/1.14.0 simplifyEnrichment/2.6.0 SingleCellExperiment/1.34.0 SingleCellSignalR/2.2.0 singleCellTK/2.22.0 SingleR/2.14.0 sitmo/2.0.2 SkewHyperbolic/0.4-2 slackr/3.3.1 slam/0.1-55 slider/0.3.3 slingshot/2.20.0 sm/2.2-6.0 smoof/1.7.0 sn/2.1.3 sna/2.8 snakecase/0.11.1 snow/0.4-4 SnowballC/0.7.1 snowfall/1.84-6.3 snowflakeauth/0.2.2 snpStats/1.62.0 softImpute/1.4-3 som/0.3-5.2 SomaticSignatures/2.48.0 SoupX/1.6.2 sourcetools/0.1.7-2 sp/2.2-1 spacexr/1.4.0 spam/2.11-3 sparkline/2.0 SparseArray/1.12.2 SparseM/1.84-2 sparseMatrixStats/1.24.0 sparsepca/0.1.2 sparsesvd/0.2-3 sparsevctrs/0.3.6 spatial/7.3-18 spatialEco/2.0-4 SpatialExperiment/1.22.0 SpatialExperimentIO/1.4.0 spatstat/3.6-0 spatstat.data/3.1-9 spatstat.explore/3.8-0 spatstat.geom/3.7-3 spatstat.linnet/3.5-0 spatstat.model/3.7-0 spatstat.random/3.4-5 spatstat.sparse/3.1-0 spatstat.univar/3.1-7 spatstat.utils/3.2-2 spd/2.0-1 spData/2.3.5 spdep/1.4-2 speckle/1.12.0 Spectra/1.22.0 speedglm/0.3-5 SPIAT/1.14.0 spicyR/1.24.0 splancs/2.01-45 splatter/1.36.0 splitfngr/0.1.2 splitstackshape/1.4.8.1 splots/1.78.0 spls/2.3-2 SpotClean/1.14.0 SPOTlight/1.16.0 SpotSweeper/1.8.0 SQUAREM/2026.1 sSeq/1.50.0 stabledist/0.7-2 StanHeaders/2.32.10 stars/0.7-2 startupmsg/1.0.0 STATegRa/1.48.0 statmod/1.5.1 statnet/2019.6 statnet.common/4.13.0 strawr/0.0.92 stringdist/0.9.17 stringfish/0.19.0 stringi/1.8.7 stringr/1.6.0 striprtf/0.6.0 strucchange/1.5-4 styler/1.11.0 subselect/0.16.1 SummarizedExperiment/1.42.0 superpc/1.12 SuppDists/1.1-9.9 survey/4.5 survival/3.8-6 survminer/0.5.2 susieR/0.14.2 sva/3.59.0 svDialogs/1.1.2 svglite/2.2.2 svgPanZoom/0.3.4 svGUI/1.0.2 svMisc/1.4.3 svUnit/1.0.8 SwissAir/1.1.6 sylly/0.1-7 synchronicity/1.3.10 sys/3.4.3 systemfit/1.1-30 systemfonts/1.3.2 systemPipeR/2.18.0 systemPipeRdata/2.15.6 tables/0.9.33 tailor/0.1.0 TailRank/3.2.4 TCGAutils/1.32.0 tclust/2.2-0 TeachingDemos/2.13 tensor/1.5.1 tensorA/0.36.2.1 tensorflow/2.20.0 TENxPBMCData/1.29.0 tergm/4.2.2 terra/1.9-11 tester/0.3.0 testthat/3.3.2 texreg/1.39.5 text2vec/0.6.6 textshaping/1.0.5 tfautograph/0.3.2 TFBSTools/1.50.0 TFisher/0.2.0 TFMPvalue/1.0.0 tfruns/1.5.4 TH.data/1.1-5 this.path/2.8.0 threejs/0.3.4 tibble/3.3.1 tictoc/1.2.1 tidydr/0.0.6 tidygraph/1.3.1 tidymodels/1.5.0 tidyr/1.3.2 tidyselect/1.2.1 tidytext/0.4.3 tidytree/0.4.7 tidyverse/2.0.0 tiff/0.1-12 tigger/1.1.3 timechange/0.4.0 timeDate/4052.112 timeSeries/4052.112 tinytex/0.59 tis/1.39 tkrplot/0.0-32 tkWidgets/1.90.0 tm/0.7-18 TMB/1.9.21 tmvnsim/1.0-2 TOAST/1.26.0 tokenizers/0.3.0 topGO/2.64.0 topicmodels/0.2-17 trackViewer/1.48.0 tradeSeq/1.26.0 TrajectoryUtils/1.20.0 transport/0.15-4 treeio/1.36.1 triebeard/0.4.1 trimcluster/0.2-0 truncdist/1.0-2 truncnorm/1.0-9 truncreg/0.2-5 trust/0.1-9 TSCAN/1.50.0 tseries/0.10-61 tsna/0.3.6 tsne/0.2-0 TSP/1.2.7 TTR/0.24.4 tune/2.1.0 tweeDEseqCountData/1.49.0 tweenr/2.0.3 TxDb.Hsapiens.UCSC.hg19.knownGene/3.22.1 txdbmaker/1.8.0 tximeta/1.30.0 tximport/1.40.0 tximportData/1.39.0 tzdb/0.5.0 UCell/2.16.0 ucminf/1.2.3 UCSC.utils/1.8.0 umap/0.2.10.0 unglue/0.1.0 units/1.0-1 universalmotif/1.30.1 UpSetR/1.4.0 urca/1.3-4 urlchecker/1.0.1 urltools/1.7.3.1 uroot/2.1-3 useful/1.2.7 usethis/3.2.1 utf8/1.2.6 uuid/1.2-2 uwot/0.2.4 V8/8.2.0 VAM/1.1.0 varhandle/2.0.6 variancePartition/1.42.0 VariantAnnotation/1.58.0 vars/1.6-1 vcd/1.4-13 vcfR/1.16.0 vctrs/0.7.3 vdiffr/1.0.9 vegan/2.7-3 venn/1.13 VennDiagram/1.8.2 verification/1.45 VGAM/1.1-14 VIM/7.0.0 vioplot/0.5.1 vip/0.4.6 vipor/0.4.7 viridis/0.6.5 viridisLite/0.4.3 visNetwork/2.1.4 vroom/1.7.1 vsn/3.80.0 waiter/0.2.5.1 waldo/0.6.2 warp/0.2.3 waveslim/1.8.5 webshot/0.5.5 WGCNA/1.74 whisker/0.4.1 whoami/1.3.0 widgetTools/1.90.0 wiggleplotr/1.36.0 withr/3.0.2 wk/0.9.5 workflows/1.3.0 workflowsets/1.1.1 writexl/1.5.4 WriteXLS/6.8.0 wrMisc/2.0.2 xergm.common/1.7.8 xfun/0.57 xgboost/3.2.1.1 xlsx/0.6.5 xlsxjars/0.9.0 XML/3.99-0.23 xml2/1.5.2 xmlparsedata/1.0.5 xopen/1.0.1 xtable/1.8-8 xts/0.14.2 XVector/0.52.0 yaImpute/1.0-36 yaml/2.3.12 YAPSA/1.38.0 yardstick/1.4.0 yarrr/0.1.14 yulab.utils/0.2.4 zCompositions/1.6.1 zeallot/0.2.0 zellkonverter/1.22.0 zigg/0.0.2 zinbwave/1.34.0 zip/2.3.3 zoo/1.8-15 -
removed:
ChIPQC/1.44.0, cummeRbund/2.50.0, DeconRNASeq/1.50.0, interactiveDisplayBase/1.48.0, RcisTarget/1.29.0, rGADEM/2.55.0- BioConductor deprecatedMKmisc/1.9- Broken and abandoned
R 4.6 packages
syntax: module / version ( latest snapshot )
abind/1.4-8 ggforce/0.5.0 PRROC/1.4
acepack/1.6.3 ggfortify/0.4.19 ps/1.9.3
ACME/2.68.0 ggfun/0.2.0 pscl/1.5.9
ade4/1.7-24 ggh4x/0.3.1 psych/2.6.3
adegraphics/1.0-22 ggiraph/0.9.6 purrr/1.2.2
admisc/0.40 ggm/2.5.2 pvclust/2.2-0
AER/1.2-16 ggmcmc/1.5.1.2 pwalign/1.8.0
affxparser/1.84.0 ggnetwork/0.5.14 pwr/1.3-0
affy/1.90.0 ggnewscale/0.5.2 qap/0.1-2
affyio/1.82.0 ggplot.multistats/1.0.1 QCA/3.24
affyPLM/1.88.0 ggplot2/4.0.3 qlcMatrix/0.9.9
aggregation/1.0.1 ggplot2movies/0.0.1 qpdf/1.4.1
airr/1.6.1 ggplotify/0.1.3 qqconf/1.3.2
airway/1.31.0 ggpointdensity/0.2.1 qqman/0.1.9
aisdk/1.1.0 ggpolypath/0.4.0 qs2/0.2.1
akima/0.6-3.6 ggprism/1.0.7 quadprog/1.5-8
alabaster.base/1.12.0 ggpubr/0.6.3 quantmod/0.4.28
alabaster.matrix/1.12.0 ggraph/2.2.2 quantreg/6.1
alabaster.ranges/1.12.0 ggrastr/1.0.2 questionr/0.8.2
alabaster.sce/1.12.0 ggrepel/0.9.8 QuickJSR/1.9.2
alabaster.schemas/1.12.0 ggridges/0.5.7 qusage/2.46.0
alabaster.se/1.12.0 ggsci/5.0.0 qvalue/2.44.0
alakazam/1.4.3 ggseqlogo/0.2.2 qvcalc/1.0.4
ALL/1.53.0 ggsignif/0.6.4 R.cache/0.17.0
amap/0.8-20 ggstance/0.3.7 R.devices/2.17.3
anndata/0.8.0 ggstats/0.13.0 R.matlab/3.7.0
anndataR/1.2.0 ggtangle/0.1.2 R.methodsS3/1.8.2
annotate/1.90.0 ggtext/0.1.2 R.oo/1.27.1
AnnotationDbi/1.74.0 ggthemes/5.2.0 R.rsp/0.46.0
AnnotationFilter/1.36.0 ggtrace/0.2.0 R.utils/2.13.0
AnnotationForge/1.54.0 ggtree/4.2.0 R2HTML/2.3.4
AnnotationHub/4.2.0 ggupset/0.4.1 R4RNA/1.40.0
AnVIL/1.24.0 ggVennDiagram/1.5.7 R6/2.6.1
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covr/3.6.5 leidenAlg/1.1.7 seqLogo/1.78.0
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dbplyr/2.5.2 locfit/1.5-9.12 shinyTree/0.3.1
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DNAshapeR/1.40.0 mHMMbayes/1.1.1 Spectra/1.22.0
doBy/4.7.1 mice/3.19.0 speedglm/0.3-5
docopt/0.7.2 micEcon/0.6-20 SPIAT/1.14.0
doFuture/1.2.1 microbenchmark/1.5.0 spicyR/1.24.0
doMC/1.3.8 miloR/2.7.2 splancs/2.01-45
doParallel/1.0.17 mime/0.13 splatter/1.36.0
doRNG/1.8.6.3 miniUI/0.1.2 splitfngr/0.1.2
dorothea/1.23.0 minpack.lm/1.2-4 splitstackshape/1.4.8.1
DOSE/4.6.0 minqa/1.2.8 splots/1.78.0
doSNOW/1.0.20 mirai/2.6.1 spls/2.3-2
dotCall64/1.2 misc3d/0.9-2 SpotClean/1.14.0
downlit/0.4.5 miscTools/0.6-30 SPOTlight/1.16.0
downloader/0.4.1 missMDA/1.21 SpotSweeper/1.8.0
dowser/2.4.1 mitml/0.4-5 SQUAREM/2026.1
dplyr/1.2.1 mitools/2.4 sSeq/1.50.0
dqrng/0.4.1 mixOmics/6.36.0 stabledist/0.7-2
drat/0.2.5 mixopt/0.1.3 StanHeaders/2.32.10
drc/3.0-1 mixsqp/0.3-54 stars/0.7-2
DRIMSeq/1.40.0 mixtools/2.0.0.1 startupmsg/1.0.0
DropletUtils/1.32.0 mlapi/0.1.1 STATegRa/1.48.0
DRR/0.0.4 mlbench/2.1-8 statmod/1.5.1
dsb/2.0.1 MLmetrics/1.1.3 statnet/2019.6
DT/0.34.0 mlogit/1.1-3 statnet.common/4.13.0
dtplyr/1.3.3 mlr/2.19.3 strawr/0.0.92
dtw/1.23-2 mlr3/1.6.0 stringdist/0.9.17
duckdb/1.5.2 mlr3learners/0.14.0 stringfish/0.19.0
duckplyr/1.2.1 mlr3measures/1.3.0 stringi/1.8.7
DWLS/0.1.0 mlr3misc/0.21.0 stringr/1.6.0
dygraphs/1.1.1.6 mlr3pipelines/0.11.0 striprtf/0.6.0
dynamicTreeCut/1.63-1 mlr3tuning/1.6.0 strucchange/1.5-4
DynDoc/1.90.0 mlrMBO/1.1.6 styler/1.11.0
dynlm/0.3-6 mmand/1.7.0 subselect/0.16.1
dynparam/1.0.2 mnormt/2.1.2 SummarizedExperiment/1.42.0
dynutils/1.0.12 mockery/0.4.5 superpc/1.12
dynwrap/1.3.0 modeldata/1.5.1 SuppDists/1.1-9.9
e1071/1.7-17 modelenv/0.2.0 survey/4.5
earth/5.3.5 ModelMetrics/1.2.2.2 survival/3.8-6
easy.utils/0.1.0 modelr/0.1.11 survminer/0.5.2
EBImage/4.54.0 modeltools/0.2-24 susieR/0.14.2
EBSeq/2.10.0 MOFA2/1.22.0 sva/3.59.0
Ecdat/0.4.7 monocle/2.40.0 svDialogs/1.1.2
Ecfun/0.4.0 mosdef/1.8.0 svglite/2.2.2
Ecume/0.9.2 motifmatchr/1.34.0 svgPanZoom/0.3.4
EDASeq/2.46.0 motifStack/1.56.0 svGUI/1.0.2
edgeR/4.10.0 MouseGastrulationData/1.25.0 svMisc/1.4.3
eds/1.14.0 msa/1.44.0 svUnit/1.0.8
effects/4.2-5 MsBackendMgf/1.20.0 SwissAir/1.1.6
egg/0.4.5 MsCoreUtils/1.24.0 sylly/0.1-7
EGSEA/1.40.0 msigdb/1.19.0 synchronicity/1.3.10
EGSEAdata/1.39.0 msigdbr/26.1.0 sys/3.4.3
ellipse/0.5.0 muhaz/1.2.6.4 systemfit/1.1-30
ellipsis/0.3.3 multcomp/1.4-30 systemfonts/1.3.2
elliptic/1.5-1 multcompView/0.1-11 systemPipeR/2.18.0
emdbook/1.3.14 MultiAssayExperiment/1.38.0 systemPipeRdata/2.15.6
emdist/0.3-3 multicool/1.0.1 tables/0.9.33
emmeans/2.0.3 multiGSEA/1.22.0 tailor/0.1.0
emoa/0.5-3 multipanelfigure/2.1.6 TailRank/3.2.4
EMT/1.3.2 multitaper/1.0-17 TCGAutils/1.32.0
energy/1.7-12 multtest/2.68.0 tclust/2.2-0
EnhancedVolcano/1.30.0 munsell/0.5.1 TeachingDemos/2.13
enrichit/0.1.4 muscat/1.26.0 tensor/1.5.1
enrichplot/1.32.0 mutoss/0.1-14 tensorA/0.36.2.1
enrichR/3.4 mvoutlier/2.1.4 tensorflow/2.20.0
ensembldb/2.36.0 mvtnorm/1.3-7 TENxPBMCData/1.29.0
entropy/1.3.2 N2R/1.0.5 tergm/4.2.2
EnvStats/3.1.0 nabor/0.5.0 terra/1.9-11
Epi/2.65 NADA/1.6-1.2 tester/0.3.0
EpiDISH/2.28.0 naivebayes/1.0.0 testthat/3.3.2
erccdashboard/1.46.0 nanoarrow/0.8.0 texreg/1.39.5
ergm/4.12.0 nanonext/1.9.0 text2vec/0.6.6
ergm.count/4.1.3 naturalsort/0.1.3 textshaping/1.0.5
ergm.multi/0.3.0 NbClust/3.0.1 tfautograph/0.3.2
escape/2.8.0 NBPSeq/0.3.1 TFBSTools/1.50.0
escheR/1.12.0 ncdfFlow/2.58.0 TFisher/0.2.0
estimability/1.5.1 Nebulosa/1.22.0 TFMPvalue/1.0.0
etm/1.1.2 network/1.20.0 tfruns/1.5.4
etrunct/0.1 networkD3/0.4.1 TH.data/1.1-5
eulerr/7.1.0 networkDynamic/0.12.0 this.path/2.8.0
europepmc/0.4.3 networkLite/1.1.0 threejs/0.3.4
evaluate/1.0.5 nleqslv/3.3.7 tibble/3.3.1
evd/2.3-7.1 nlme/3.1-169 tictoc/1.2.1
evmix/2.12 nloptr/2.2.1 tidydr/0.0.6
Exact/3.3 NLP/0.3-2 tidygraph/1.3.1
exactextractr/0.10.1 nls2/0.3-4 tidymodels/1.5.0
exactRankTests/0.8-37 nlstools/2.1-0 tidyr/1.3.2
ExperimentHub/3.2.0 NMF/0.28 tidyselect/1.2.1
expm/1.0-0 NMOF/2.11-0 tidytext/0.4.3
extraDistr/1.10.0.3 nnet/7.3-20 tidytree/0.4.7
extrafont/0.20 nnls/1.6 tidyverse/2.0.0
extrafontdb/1.1 NOISeq/2.56.0 tiff/0.1-12
extRemes/2.2-1 nor1mix/1.3-3 tigger/1.1.3
factoextra/2.0.0 nortest/1.0-4 timechange/0.4.0
FactoMineR/2.14 numbat/1.5.2 timeDate/4052.112
fail/1.3 numDeriv/2016.8-1.1 timeSeries/4052.112
fANCOVA/0.6-1 nycflights13/1.0.2 tinytex/0.59
fansi/1.0.7 officer/0.7.4 tis/1.39
farver/2.1.2 oligo/1.76.0 tkrplot/0.0-32
fastcluster/1.3.0 oligoClasses/1.74.0 tkWidgets/1.90.0
fastDummies/1.7.6 oompaBase/3.2.11 tm/0.7-18
fastICA/1.2-7 oompaData/3.1.5 TMB/1.9.21
fastmap/1.2.0 openCyto/2.24.0 tmvnsim/1.0-2
fastmatch/1.1-8 OpenImageR/1.3.0 TOAST/1.26.0
fastmatrix/0.6-6 openssl/2.4.0 tokenizers/0.3.0
fBasics/4052.98 openxlsx/4.2.8.1 topGO/2.64.0
FD/1.0-12.5 optextras/2019-12.4 topicmodels/0.2-17
fda/6.3.0 optimx/2025-4.9 trackViewer/1.48.0
fdrtool/1.2.18 optparse/1.8.2 tradeSeq/1.26.0
fds/1.9 ordinal/2025.12-29 TrajectoryUtils/1.20.0
feather/0.4.0 org.Hs.eg.db/3.23.1 transport/0.15-4
ff/4.5.2 org.Mm.eg.db/3.23.0 treeio/1.36.1
fftw/1.0-9 org.Rn.eg.db/3.23.0 triebeard/0.4.1
fftwtools/0.9-11 OrganismDbi/1.54.0 trimcluster/0.2-0
fGarch/4052.93 orientlib/0.10.5 truncdist/1.0-2
fgsea/1.38.0 orthogene/1.18.1 truncnorm/1.0-9
fields/17.3 orthopolynom/1.0-6.1 truncreg/0.2-5
filelock/1.0.3 osfr/0.2.9 trust/0.1-9
findpython/1.0.9 otel/0.2.0 TSCAN/1.50.0
fit.models/0.64 packrat/0.9.3 tseries/0.10-61
fitdistrplus/1.2-6 PADOG/1.54.0 tsna/0.3.6
FLAMES/2.6.0 pagoda2/1.0.15 tsne/0.2-0
flashClust/1.1-4 PAIRADISE/1.28.0 TSP/1.2.7
flexdashboard/0.6.3 pak/0.9.5 TTR/0.24.4
flexmix/2.3-20 paletteer/1.7.0 tune/2.1.0
float/0.3-3 palmerpenguins/0.1.1 tweeDEseqCountData/1.49.0
flowAI/1.42.0 pals/1.10 tweenr/2.0.3
flowClust/3.50.0 pamr/1.57 TxDb.Hsapiens.UCSC.hg19.knownGene/3.22.1
flowCore/2.24.0 pan/1.9 txdbmaker/1.8.0
FlowSOM/2.20.0 pander/0.6.6 tximeta/1.30.0
flowStats/4.24.0 paradox/1.0.1 tximport/1.40.0
flowTrans/1.64.0 parallelDist/0.2.7 tximportData/1.39.0
flowViz/1.76.0 parallelly/1.47.0 tzdb/0.5.0
flowWorkspace/4.24.0 parallelMap/1.5.1 UCell/2.16.0
FNN/1.1.4.1 ParamHelpers/1.14.2 ucminf/1.2.3
fontawesome/0.5.3 parsnip/1.5.0 UCSC.utils/1.8.0
fontBitstreamVera/0.1.1 party/1.3-20 umap/0.2.10.0
fontLiberation/0.1.0 partykit/1.2-27 unglue/0.1.0
fontquiver/0.2.1 pastecs/1.4.2 units/1.0-1
forcats/1.0.1 patchwork/1.3.2 universalmotif/1.30.1
foreach/1.5.2 pathview/1.52.0 UpSetR/1.4.0
forecast/9.0.2 pbapply/1.7-4 urca/1.3-4
foreign/0.8-91 pbdZMQ/0.3-14 urlchecker/1.0.1
formatR/1.14 pbkrtest/0.5.5 urltools/1.7.3.1
formattable/0.2.1 pbmcapply/1.5.1 uroot/2.1-3
Formula/1.2-5 pcaExplorer/3.6.0 useful/1.2.7
fortunes/1.5-4 pcaMethods/2.4.0 usethis/3.2.1
fpc/2.2-14 pcaPP/2.0-5 utf8/1.2.6
fracdiff/1.5-4 PCAtools/2.24.0 uuid/1.2-2
fresh/0.2.2 pdftools/3.8.0 uwot/0.2.4
fs/2.1.0 pdist/1.2.1 V8/8.2.0
fst/0.9.8 PeacoQC/1.22.0 VAM/1.1.0
fstcore/0.10.0 penalized/0.9-53 varhandle/2.0.6
furrr/0.4.0 Peptides/2.4.6 variancePartition/1.42.0
futile.logger/1.4.9 perm/1.0-0.4 VariantAnnotation/1.58.0
futile.options/1.0.1 permute/0.9-10 vars/1.6-1
future/1.70.0 perry/0.3.1 vcd/1.4-13
future.apply/1.20.2 pfamAnalyzeR/1.12.0 vcfR/1.16.0
fuzzyjoin/0.1.8 phangorn/2.12.1 vctrs/0.7.3
gage/2.62.0 pheatmap/1.0.13 vdiffr/1.0.9
gageData/2.49.0 philentropy/0.10.0 vegan/2.7-3
gam/1.22-7 phyclust/0.1-34 venn/1.13
gamlss/5.5-0 phylobase/0.8.12 VennDiagram/1.8.2
gamlss.data/6.0-7 phylotate/1.3 verification/1.45
gamlss.dist/6.1-1 pillar/1.11.1 VGAM/1.1-14
gamm4/0.2-7 pinfsc50/1.3.0 VIM/7.0.0
gargle/1.6.1 pixmap/0.4-14 vioplot/0.5.1
GauPro/0.2.17 pkgbuild/1.4.8 vip/0.4.6
gbRd/0.4.12 pkgconfig/2.0.3 vipor/0.4.7
gbutils/0.5.1 pkgdown/2.2.0 viridis/0.6.5
gcatest/2.12.0 pkgload/1.5.2 viridisLite/0.4.3
gclus/1.3.3 PKI/0.1-15 visNetwork/2.1.4
GCPtools/1.2.0 plm/2.6-7 vroom/1.7.1
gcrma/2.84.0 plot3D/1.4.2 vsn/3.80.0
gdata/3.0.1 plotly/4.12.0 waiter/0.2.5.1
gdtools/0.5.0 plotmo/3.7.0 waldo/0.6.2
geepack/1.3.13 plotrix/3.8-14 warp/0.2.3
genefilter/1.94.0 pls/2.9-0 waveslim/1.8.5
geneLenDataBase/1.47.0 plyr/1.8.9 webshot/0.5.5
GeneNet/1.2.17 plyranges/1.32.0 WGCNA/1.74
GeneOverlap/1.48.0 PMCMRplus/1.9.12 whisker/0.4.1
geneplotter/1.90.0 png/0.1-9 whoami/1.3.0
GeneralizedHyperbolic/0.8-7 poilog/0.4.2.1 widgetTools/1.90.0
generics/0.1.4 poLCA/1.6.0.2 wiggleplotr/1.36.0
GENIE3/1.34.0 polspline/1.1.25 withr/3.0.2
genio/1.1.2 Polychrome/1.5.4 wk/0.9.5
genomation/1.44.0 polyclip/1.10-7 workflows/1.3.0
GenomeInfoDb/1.48.0 polylabelr/1.0.0 workflowsets/1.1.1
genomeIntervals/1.68.0 polynom/1.4-1 writexl/1.5.4
GenomicAlignments/1.48.0 poorman/0.2.7 WriteXLS/6.8.0
GenomicDataCommons/1.36.0 posterior/1.7.0 wrMisc/2.0.2
GenomicFeatures/1.64.0 poweRlaw/1.0.0 xergm.common/1.7.8
GenomicPlot/1.10.0 powerTCR/1.32.0 xfun/0.57
GenomicRanges/1.64.0 prabclus/2.3-5 xgboost/3.2.1.1
GenomicScores/2.24.0 pracma/2.4.6 xlsx/0.6.5
GenSA/1.1.15 praise/1.0.0 xlsxjars/0.9.0
geojsonR/1.1.2 precrec/0.14.5 XML/3.99-0.23
geometry/0.5.2 preprocessCore/1.74.0 xml2/1.5.2
GEOquery/2.80.0 preseqR/4.0.0 xmlparsedata/1.0.5
geosphere/1.6-8 prettyunits/1.2.0 xopen/1.0.1
gert/2.3.1 princurve/2.1.6 xtable/1.8-8
getopt/1.21.1 prismatic/1.1.2 xts/0.14.2
GetoptLong/1.1.1 pROC/1.19.0.1 XVector/0.52.0
gfonts/0.2.0 processx/3.9.0 yaImpute/1.0-36
gg.gap/1.3 prodlim/2026.03.11 yaml/2.3.12
ggalluvial/0.12.6 profileModel/0.6.2 YAPSA/1.38.0
GGally/2.4.0 profvis/0.4.0 yardstick/1.4.0
ggbeeswarm/0.7.3 progress/1.2.3 yarrr/0.1.14
ggbio/1.60.0 progressr/0.19.0 yulab.utils/0.2.4
ggbreak/0.1.7 proj4/1.0-15 zCompositions/1.6.1
ggcorrplot/0.1.4.1 projpred/2.10.0 zeallot/0.2.0
ggcyto/1.40.0 promises/1.5.0 zellkonverter/1.22.0
ggdendro/0.2.0 ProtGenerics/1.44.0 zigg/0.0.2
ggdist/3.3.3 proto/1.0.0 zinbwave/1.34.0
ggExtra/0.11.0 proxy/0.4-29 zip/2.3.3
ggfittext/0.10.3 proxyC/0.5.2 zoo/1.8-15