R 4.5 packages -- generated 2026-05-07
Reproducibility
Older versions may be available in historic snapshots (run module avail R-cbrg for history).
See R-cbrg for details.
Changes (last 90 days)
2026-04-28: new: anndataR/1.0.2
2026-04-10: new: BumpyMatrix/1.18.0 MouseGastrulationData/1.24.0
2026-03-23: new:
ClassifyR/3.14.0 coxme/2.2-22 cytomapper/1.22.0 dcanr/1.26.0 ggh4x/0.3.1 scam/1.2-22
simpleSeg/1.12.0 spicyR/1.22.0 svgPanZoom/0.3.4
2026-03-04: removed: sccomp/2.2.0 - Requires cmdstan that is incompatible with system install
R 4.5 packages
syntax: module / version ( latest snapshot )
abind/1.4-8 ggalluvial/0.12.5 proxyC/0.5.2
acepack/1.6.3 GGally/2.4.0 PRROC/1.4
/1.6.1 (202601) /2.2.1 (202601) pryr/0.1.6
ACME/2.66.0 ggalt/0.4.0 ps/1.9.1
/2.64.0 (202601) ggbeeswarm/0.7.3 pscl/1.5.9
ade4/1.7-23 /0.7.2 (202601) psych/2.5.6
adegraphics/1.0-22 ggbio/1.58.0 /2.5.3 (202601)
admisc/0.39 /1.56.0 (202601) purrr/1.2.1
/0.38 (202601) ggbreak/0.1.6 /1.0.4 (202601)
AER/1.2-15 /0.1.4 (202601) pvclust/2.2-0
/1.2-14 (202601) ggcorrplot/0.1.4.1 pwalign/1.6.0
affxparser/1.82.0 ggcyto/1.38.1 /1.4.0 (202601)
/1.80.0 (202601) /1.36.0 (202601) pwr/1.3-0
affy/1.88.0 ggdendro/0.2.0 qap/0.1-2
/1.86.0 (202601) ggdist/3.3.3 QCA/3.23
affyio/1.80.0 ggExpress/0.9.5 qlcMatrix/0.9.9
/1.78.0 (202601) ggExtra/0.11.0 /0.9.8 (202601)
affyPLM/1.86.0 /0.10.1 (202601) qpdf/1.4.1
/1.84.0 (202601) ggfittext/0.10.3 /1.3.5 (202601)
aggregation/1.0.1 /0.10.2 (202601) qqconf/1.3.2
airr/1.5.0 ggforce/0.5.0 qqman/0.1.9
airway/1.30.0 /0.4.2 (202601) qs/0.27.3
/1.28.0 (202601) ggforestplot/0.1.0 qs2/0.1.7
akima/0.6-3.6 ggfortify/0.4.19 quadprog/1.5-8
alabaster.base/1.10.0 /0.4.17 (202601) quantmod/0.4.28
/1.8.0 (202601) ggfun/0.2.0 /0.4.27 (202601)
alabaster.matrix/1.10.0 /0.1.8 (202601) quantreg/6.1
/1.8.0 (202601) ggh4x/0.3.1 questionr/0.8.1
alabaster.ranges/1.10.0 ggiraph/0.9.2 QuickJSR/1.8.1
/1.8.0 (202601) /0.8.13 (202601) /1.8.0 (202601)
alabaster.sce/1.10.0 ggm/2.5.2 qusage/2.44.0
/1.8.0 (202601) /2.5.1 (202601) /2.42.0 (202601)
alabaster.schemas/1.10.0 ggmcmc/1.5.1.2 qvalue/2.42.0
/1.8.0 (202601) /1.5.1.1 (202601) /2.40.0 (202601)
alabaster.se/1.10.0 ggnetwork/0.5.14 qvcalc/1.0.4
/1.8.0 (202601) /0.5.13 (202601) R.cache/0.17.0
alakazam/1.4.2 ggnewscale/0.5.2 R.devices/2.17.3
/1.3.0 (202601) /0.5.1 (202601) /2.17.2 (202601)
ALL/1.52.0 ggplot.multistats/1.0.1 R.matlab/3.7.0
/1.50.0 (202601) ggplot2/4.0.1 R.methodsS3/1.8.2
amap/0.8-20 /3.5.2 (202601) R.oo/1.27.1
AmplificationTimeR/1.1.2 ggplot2movies/0.0.1 R.rsp/0.46.0
anndata/0.8.0 ggplotify/0.1.3 R.utils/2.13.0
anndataR/1.0.2 /0.1.2 (202601) R2HTML/2.3.4
annotate/1.88.0 ggpointdensity/0.2.1 R4RNA/1.38.0
/1.86.0 (202601) /0.2.0 (202601) /1.36.0 (202601)
AnnotationDbi/1.72.0 ggpolypath/0.4.0 R6/2.6.1
/1.70.0 (202601) /0.3.0 (202601) ragg/1.5.0
AnnotationFilter/1.34.0 ggprism/1.0.7 /1.4.0 (202601)
/1.32.0 (202601) /1.0.6 (202601) RaggedExperiment/1.34.0
AnnotationForge/1.52.0 ggpubr/0.6.2 /1.32.2 (202601)
/1.50.0 (202601) /0.6.0 (202601) rainbow/3.8
AnnotationHub/4.0.0 ggraph/2.2.2 randomcoloR/1.1.0.1
/3.16.0 (202601) /2.2.1 (202601) randomForest/4.7-1.2
AnVIL/1.22.3 ggrastr/1.0.2 randomForestSRC/3.5.0
/1.20.1 (202601) ggrepel/0.9.6 /3.4.1 (202601)
AnVILBase/1.4.0 ggridges/0.5.7 ranger/0.17.0
/1.2.0 (202601) /0.5.6 (202601) RANN/2.6.2
anytime/0.3.12 ggsci/4.2.0 rapiclient/0.1.8
/0.3.11 (202601) /3.2.0 (202601) RApiSerialize/0.1.4
aod/1.3.3 ggseqlogo/0.2.2 rappdirs/0.3.3
apcluster/1.4.14 /0.2 (202601) rARPACK/0.11-0
/1.4.13 (202601) ggsignif/0.6.4 raster/3.6-32
ape/5.8-1 ggstance/0.3.7 RBGL/1.86.0
apeglm/1.32.0 ggstats/0.12.0 /1.84.0 (202601)
/1.30.0 (202601) /0.9.0 (202601) rbibutils/2.4
aplot/0.2.9 ggtangle/0.1.0 /2.3 (202601)
/0.2.6 (202601) /0.0.6 (202601) RCAS/1.36.0
ArchR/1.0.3 ggtext/0.1.2 /1.34.0 (202601)
argparse/2.3.1 ggthemes/5.2.0 RCircos/1.2.2
/2.2.5 (202601) /5.1.0 (202601) RcisTarget/1.29.0
argparser/0.7.2 ggtrace/0.2.0 /1.28.1 (202601)
aricode/1.0.3 ggtree/4.0.4 rcmdcheck/1.4.0
aroma.light/3.40.0 /3.16.0 (202601) RColorBrewer/1.1-3
/3.38.0 (202601) ggupset/0.4.1 Rcpm/1.0.4
arrangements/1.1.9 ggVennDiagram/1.5.7 Rcpp/1.1.1
arrow/22.0.0.1 /1.5.2 (202601) /1.0.14 (202601)
/20.0.0.2 (202601) gh/1.5.0 RcppAnnoy/0.0.23
ash/1.0-15 GIGrvg/0.8 /0.0.22 (202601)
ashr/2.2-63 Giotto/3.3.2 RcppArmadillo/15.2.3-1
askpass/1.2.1 GiottoClass/0.4.10 /14.4.3-1 (202601)
assertthat/0.2.1 /0.3.5 (202601) RcppDist/0.1.1.1
assorthead/1.4.0 GiottoData/0.2.14 RcppEigen/0.3.4.0.2
/1.2.0 (202601) GiottoUtils/0.2.5 RcppGSL/0.3.13
ATACseqQC/1.34.0 /0.1.12 (202601) RcppHNSW/0.6.0
/1.32.0 (202601) GiottoVisuals/0.2.14 RcppHungarian/0.3
ath1121501.db/3.13.0 /0.2.4 (202601) RcppML/0.3.7
ath1121501cdf/2.18.0 git2r/0.36.2 RcppNumerical/0.6-0
AUC/0.3.2 gitcreds/0.1.2 RcppParallel/5.1.11-1
AUCell/1.32.0 gld/2.6.8 /5.1.10 (202601)
/1.30.1 (202601) /2.6.7 (202601) RcppPlanc/2.0.12
aws.s3/0.3.22 glmGamPoi/1.22.0 RcppProgress/0.4.2
/0.3.21 (202601) /1.20.0 (202601) RcppRoll/0.3.1
aws.signature/0.6.0 glmmSeq/0.5.7 RcppSpdlog/0.0.25
Azimuth/0.5.0 /0.5.5 (202601) /0.0.22 (202601)
babel/0.3-0 glmmTMB/1.1.14 RcppThread/2.2.0
babelgene/22.9 /1.1.11 (202601) RcppTOML/0.2.3
babelwhale/1.2.0 glmnet/4.1-10 RcppZiggurat/0.1.8
backports/1.5.0 /4.1-9 (202601) RCurl/1.98-1.17
ballgown/2.42.0 glmpath/0.98 Rdpack/2.6.4
/2.40.0 (202601) glmpca/0.2.0 reactable/0.4.5
bambu/3.12.0 GlobalOptions/0.1.3 /0.4.4 (202601)
/3.10.0 (202601) /0.1.2 (202601) reactome.db/1.95.0
Banksy/1.6.0 globals/0.18.0 /1.92.0 (202601)
/1.5.6 (202601) globaltest/5.64.0 ReactomeGSA/1.24.0
base64/2.0.2 /5.62.0 (202601) /1.22.0 (202601)
base64enc/0.1-3 glue/1.8.0 ReactomePA/1.54.0
base64url/1.4 gmm/1.9-1 /1.52.0 (202601)
basilisk/1.22.0 /1.8 (202601) reactR/0.6.1
/1.20.0 (202601) gmodels/2.19.1 readbitmap/0.1.5
basilisk.utils/1.22.0 gmp/0.7-5 readr/2.1.6
/1.20.0 (202601) GO.db/3.22.0 /2.1.5 (202601)
BASS/1.3.1 /3.21.0 (202601) ReadWriter/1.6.0
/1.1.0.017 (202601) goftest/1.2-3 readxl/1.4.5
batchelor/1.26.0 googledrive/2.1.2 recipes/1.3.1
/1.24.0 (202601) /2.1.1 (202601) RefManageR/1.4.0
BatchJobs/1.10 googlesheets4/1.1.2 reformulas/0.4.3.1
/1.9 (202601) /1.1.1 (202601) /0.4.1 (202601)
batchtools/0.9.18 googleVis/0.7.3 regioneR/1.42.0
/0.9.17 (202601) GOSemSim/2.36.0 /1.40.1 (202601)
BayesFactor/0.9.12-4.7 /2.34.0 (202601) registry/0.5-1
bayesm/3.1-7 goseq/1.62.0 relations/0.6-15
/3.1-6 (202601) /1.60.0 (202601) reldist/1.7-2
bayesplot/1.15.0 GOstats/2.76.0 rem/1.3.1
/1.12.0 (202601) /2.74.0 (202601) remaCor/0.0.20
BayesSpace/1.20.2 goTools/1.84.0 /0.0.18 (202601)
/1.18.1 (202601) /1.82.0 (202601) rematch/2.0.0
BB/2019.10-1 gower/1.0.2 rematch2/2.1.2
BBmisc/1.13 GPArotation/2025.3-1 remotes/2.5.0
bbmle/1.0.25.1 GPfit/1.0-9 rentrez/1.2.4
bbotk/1.8.1 gplots/3.3.0 renv/1.1.5
bcellViper/1.46.0 /3.2.0 (202601) /1.1.4 (202601)
/1.44.0 (202601) gProfileR/0.7.0 repmis/0.5.1
BCRANK/1.72.0 gprofiler2/0.2.4 repr/1.1.7
/1.70.0 (202601) /0.2.3 (202601) reprex/2.1.1
bdsmatrix/1.3-7 graph/1.88.1 reshape/0.8.10
beachmat/2.26.0 /1.86.0 (202601) /0.8.9 (202601)
/2.24.0 (202601) graphite/1.56.0 reshape2/1.4.5
beadarray/2.58.0 /1.54.0 (202601) /1.4.4 (202601)
BeadDataPackR/1.62.0 graphlayouts/1.2.2 ResidualMatrix/1.20.0
/1.60.0 (202601) GreyListChIP/1.42.0 /1.18.0 (202601)
beanplot/1.3.1 /1.40.0 (202601) restfulr/0.0.16
BEDMatrix/2.0.4 gridBase/0.4-7 /0.0.15 (202601)
bedr/1.1.3 gridExtra/2.3 reticulate/1.44.1
beeswarm/0.4.0 gridGraphics/0.5-1 /1.42.0 (202601)
betareg/3.2-4 gridtext/0.1.5 rex/1.2.1
/3.2-3 (202601) grImport/0.9-7 Rfast/2.1.5.2
BH/1.90.0-1 grImport2/0.3-3 /2.1.5.1 (202601)
/1.87.0-1 (202601) grr/0.9.5 Rfast2/0.1.5.5
BiasedUrn/2.0.12 gruffi/1.5.5 /0.1.5.4 (202601)
bibtex/0.5.1 GSA/1.03.3 rfigshare/0.3.8
bigD/0.3.1 gsalib/2.2.1 rGADEM/2.55.0
biglm/0.9-3 GSEABase/1.72.0 rgl/1.3.31
bigmemory.sri/0.1.8 /1.70.0 (202601) /1.3.18 (202601)
bindr/0.1.3 gsignal/0.3-7 Rgraphviz/2.54.0
/0.1.2 (202601) gsl/2.1-9 /2.52.0 (202601)
bindrcpp/0.2.3 /2.1-8 (202601) rhandsontable/0.3.8
binom/1.1-1.1 gson/0.1.0 rhdf5/2.54.1
Biobase/2.70.0 gss/2.2-10 /2.52.1 (202601)
/2.68.0 (202601) /2.2-9 (202601) rhdf5filters/1.22.0
BiocBaseUtils/1.12.0 gsubfn/0.7 /1.20.0 (202601)
/1.10.0 (202601) GSVA/2.4.4 Rhdf5lib/1.32.0
BiocFileCache/3.0.0 /2.2.0 (202601) /1.30.0 (202601)
/2.16.0 (202601) GSVAdata/1.46.0 RhpcBLASctl/0.23-42
BiocGenerics/0.56.0 /1.44.0 (202601) Rhtslib/3.6.0
/0.54.0 (202601) gt/1.2.0 /3.4.0 (202601)
BiocIO/1.20.0 /1.0.0 (202601) RInside/0.2.19
/1.18.0 (202601) gtable/0.3.6 rintrojs/0.3.4
BiocManager/1.30.27 gtools/3.9.5 rio/1.2.4
/1.30.26 (202601) gtrellis/1.42.0 /1.2.3 (202601)
BiocNeighbors/2.4.0 /1.40.0 (202601) rJava/1.0-11
/2.2.0 (202601) gtsummary/2.5.0 rjson/0.2.23
BiocParallel/1.44.0 /2.2.0 (202601) RJSONIO/2.0.0
/1.42.1 (202601) Gviz/1.54.0 rlang/1.1.7
BiocSingular/1.26.1 /1.52.0 (202601) /1.1.6 (202601)
/1.24.0 (202601) gypsum/1.6.0 rle/0.10.0
BiocStyle/2.38.0 /1.4.0 (202601) rlecuyer/0.3-8
/2.36.0 (202601) h2o/3.44.0.3 rliger/2.2.1
BiocVersion/3.22.0 h5mread/1.2.1 /2.2.0 (202601)
/3.21.1 (202601) /1.0.1 (202601) rlist/0.4.6.2
biocViews/1.78.0 hahmmr/1.0.0 RMariaDB/1.3.4
/1.76.0 (202601) hardhat/1.4.2 rmarkdown/2.30
biomaRt/2.66.0 /1.4.1 (202601) /2.29 (202601)
/2.64.0 (202601) HardyWeinberg/1.7.9 rmdformats/1.0.4
Biostrings/2.78.0 /1.7.8 (202601) rmeta/3.0
/2.76.0 (202601) harmony/1.2.4 Rmisc/1.5.1
biovizBase/1.58.0 /1.2.3 (202601) Rmpfr/1.1-2
/1.56.0 (202601) hash/2.2.6.3 /1.1-0 (202601)
BiSeq/1.50.0 haven/2.5.5 RMTstat/0.3.1
/1.48.1 (202601) HDF5Array/1.38.0 rmutil/1.1.10
bit/4.6.0 /1.36.0 (202601) RMySQL/0.11.1
bit64/4.6.0-1 hdf5r/1.3.12 Rnanoflann/0.0.3
bitops/1.0-9 hdf5r.Extra/0.1.0 rncl/0.8.8
blme/1.0-7 HDO.db/1.0.0 /0.8.7 (202601)
/1.0-6 (202601) hdrcde/3.5.0 RNeXML/2.4.11
blob/1.3.0 /3.4 (202601) rngtools/1.5.2
/1.2.4 (202601) hdWGCNA/0.3.00 robCompositions/2.4.2
blockmodeling/1.1.8 heatmap3/1.1.9 /2.4.1 (202601)
/1.1.5 (202601) heatmaply/1.6.0 robust/0.7-5
bluster/1.20.0 /1.5.0 (202601) robustbase/0.99-6
/1.18.0 (202601) here/1.0.2 /0.99-4-1 (202601)
BMA/3.18.20 /1.0.1 (202601) robustHD/0.8.3
bmp/0.3.1 hexbin/1.28.5 /0.8.1 (202601)
/0.3 (202601) HGNChelper/0.8.15 ROCR/1.0-11
bnbc/1.32.0 hgu133a.db/3.13.0 Rook/1.2
/1.30.0 (202601) hgu133bcdf/2.18.0 rootSolve/1.8.2.4
bookdown/0.46 hgu133bprobe/2.18.0 roptim/0.1.7
/0.43 (202601) hgu133plus2.db/3.13.0 /0.1.6 (202601)
boot/1.3-32 hgu95a.db/3.13.0 ROTS/2.2.0
/1.3-31 (202601) hgu95acdf/2.18.0 /2.0.0 (202601)
Boruta/9.0.0 hgu95aprobe/2.18.0 roxygen2/7.3.3
/8.0.0 (202601) hgu95av2/2.2.0 /7.3.2 (202601)
BPCells/0.3.0 HiCBricks/1.28.0 rpart/4.1.24
BradleyTerry2/1.1.3 /1.26.0 (202601) rpart.plot/3.1.4
brew/1.0-10 HiCcompare/1.32.0 /3.1.2 (202601)
brglm/0.7.3 /1.30.0 (202601) Rphenoannoy/0.1.0
/0.7.2 (202601) HiddenMarkov/1.8-14 Rphenograph/0.99.1
bridgesampling/1.2-1 hierarchicell/1.0.0 rprojroot/2.1.1
/1.1-2 (202601) highcharter/0.9.4 /2.0.4 (202601)
brio/1.1.5 HighFive/3.3.0 RProtoBufLib/2.22.0
brms/2.23.0 highlight/0.5.2 /2.20.0 (202601)
/2.22.0 (202601) /0.5.1 (202601) rrcov/1.7-7
Brobdingnag/1.2-9 highr/0.11 rsample/1.3.1
broom/1.0.11 Hmisc/5.2-5 /1.3.0 (202601)
/1.0.8 (202601) /5.2-3 (202601) Rsamtools/2.26.0
broom.helpers/1.22.0 HMMcopy/1.52.0 /2.24.0 (202601)
/1.21.0 (202601) /1.50.0 (202601) RSclient/0.7-11
BSgenome/1.78.0 hms/1.1.4 /0.7-10 (202601)
/1.76.0 (202601) /1.1.3 (202601) rsconnect/1.7.0
BSgenome.Drerio.UCSC.danRer10/1.4.2 Homo.sapiens/1.3.1 /1.4.1 (202601)
BSgenome.Drerio.UCSC.danRer11/1.4.2 homologene/1.4.68.19.3.27 Rserve/1.8-16
BSgenome.Drerio.UCSC.danRer7/1.4.0 hopach/2.70.0 /1.8-15 (202601)
BSgenome.Ggallus.UCSC.galGal5/1.4.2 /2.68.0 (202601) Rsolnp/2.0.1
BSgenome.Hsapiens.UCSC.hg18/1.3.1000 HSMMSingleCell/1.30.0 /1.16 (202601)
BSgenome.Hsapiens.UCSC.hg19/1.4.3 /1.28.0 (202601) rsparse/0.5.3
BSgenome.Hsapiens.UCSC.hg38/1.4.5 htmlTable/2.4.3 RSpectra/0.16-2
BSgenome.Hsapiens.UCSC.hg38.masked/1.4.5 htmltools/0.5.9 RSQLite/2.4.5
BSgenome.Mmusculus.UCSC.mm10/1.4.3 /0.5.8.1 (202601) /2.4.1 (202601)
BSgenome.Mmusculus.UCSC.mm39/1.4.3 HTMLUtils/0.1.9 rstan/2.32.7
BSgenome.Mmusculus.UCSC.mm9/1.4.0 htmlwidgets/1.6.4 rstanarm/2.32.1
bslib/0.9.0 httpcode/0.3.0 rstantools/2.6.0
BuenColors/0.5.6 httpuv/1.6.16 /2.4.0 (202601)
BulkSignalR/1.2.1 httr/1.4.7 rstatix/0.7.3
bumphunter/1.52.0 httr2/1.2.2 /0.7.2 (202601)
/1.50.0 (202601) /1.1.2 (202601) rstudioapi/0.17.1
BumpyMatrix/1.18.0 HuExExonProbesetLocationHg19/0.0.3 Rsubread/2.24.0
BUSpaRse/1.24.0 hwriter/1.3.2.1 /2.22.1 (202601)
/1.22.0 (202601) hypergeo/1.2-14 rsvd/1.0.5
BWStest/0.2.3 hypergraph/1.82.0 rsvg/2.7.0
ca/0.71.1 /1.80.0 (202601) /2.6.2 (202601)
cachem/1.1.0 ica/1.0-3 RTCGA/1.40.0
Cairo/1.7-0 IDPmisc/1.1.21 /1.38.0 (202601)
/1.6-2 (202601) idr/1.3 RTCGAToolbox/2.40.0
calibrate/1.7.7 ids/1.0.1 /2.38.0 (202601)
callr/3.7.6 igraph/2.2.1 rtracklayer/1.70.1
car/3.1-3 /2.1.4 (202601) /1.68.0 (202601)
CARD/1.1 IHW/1.38.0 Rtsne/0.17
card/0.1.1 /1.36.0 (202601) Rttf2pt1/1.3.14
carData/3.0-5 illuminaHumanv1.db/1.26.0 /1.3.12 (202601)
cards/0.7.1 illuminaHumanv3.db/1.26.0 rugarch/1.5-4
/0.6.0 (202601) illuminaHumanv4.db/1.26.0 /1.5-3 (202601)
cardx/0.3.1 illuminaio/0.52.0 RUnit/0.4.33.1
caret/7.0-1 /0.50.0 (202601) ruv/0.9.7.1
carrier/0.3.0.4 immApex/1.4.3 RUVSeq/1.44.0
/0.1.1 (202601) immunarch/0.10.3 /1.42.0 (202601)
CATALYST/1.34.1 /0.9.1 (202601) rvcheck/0.2.1
/1.32.0 (202601) immundata/0.0.5 RVenn/1.1.0
Category/2.76.0 impute/1.84.0 rversions/3.0.0
/2.74.0 (202601) /1.82.0 (202601) /2.1.2 (202601)
caTools/1.18.3 ineq/0.2-13 rvest/1.0.5
cBioPortalData/2.22.1 iNEXT/3.0.2 /1.0.4 (202601)
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cccd/1.6 infer/1.1.0 /0.3.5 (202601)
ccRemover/1.0.4 /1.0.8 (202601) Rwave/2.6-5
celda/1.26.0 infinityFlow/1.20.1 rworldmap/1.3-8
/1.24.0 (202601) /1.18.0 (202601) rzmq/0.9.15
CellBench/1.26.0 inflection/1.3.7 s2/1.1.9
/1.24.0 (202601) /1.3.6 (202601) S4Arrays/1.10.1
CellChat/2.1.2 influenceR/0.1.5 /1.8.1 (202601)
celldex/1.20.0 infotheo/1.2.0.1 S4Vectors/0.48.0
/1.18.0 (202601) ini/0.3.1 /0.46.0 (202601)
cellhashR/1.2.1 inline/0.3.21 S7/0.2.1
cellranger/1.1.0 insight/1.4.4 safe/3.50.0
Cepo/1.16.0 /1.3.0 (202601) /3.48.0 (202601)
/1.14.0 (202601) instantiate/0.2.3 sampleSelection/1.2-12
CGHbase/1.70.0 InteractionSet/1.38.0 samr/3.0
/1.68.0 (202601) /1.36.1 (202601) sandwich/3.1-1
CGHregions/1.68.0 interactiveDisplayBase/1.48.0 sass/0.4.10
/1.66.0 (202601) /1.46.0 (202601) satuRn/1.18.0
changepoint/2.3 intergraph/2.0-4 /1.16.0 (202601)
checkmate/2.3.3 interp/1.1-6 SAVER/1.1.2
/2.3.2 (202601) intervals/0.15.5 SC3/1.38.0
chemometrics/1.4.4 intrinsicDimension/1.2.0 /1.36.0 (202601)
chickencdf/2.18.0 inum/1.0-5 ScaledMatrix/1.18.0
chipenrich.data/2.34.0 invgamma/1.2 /1.16.0 (202601)
/2.32.0 (202601) /1.1 (202601) scales/1.4.0
ChIPpeakAnno/3.44.0 ipred/0.9-15 scam/1.2-22
/3.42.0 (202601) IRanges/2.44.0 scater/1.38.0
ChIPQC/1.44.0 /2.42.0 (202601) /1.36.0 (202601)
ChIPseeker/1.46.1 IRdisplay/1.1 scattermore/1.2
/1.44.0 (202601) IRkernel/1.3.2 scatterpie/0.2.6
chipseq/1.60.0 irlba/2.3.5.1 /0.2.4 (202601)
/1.58.0 (202601) iSEE/2.22.0 scatterplot3d/0.3-44
chromVAR/1.32.0 /2.20.0 (202601) scClassify/1.22.0
/1.30.1 (202601) Iso/0.0-21 /1.20.0 (202601)
chromVARmotifs/0.2.0 isoband/0.3.0 sccomp/2.0.0 (202604)
chron/2.3-62 /0.2.7 (202601) sccore/1.0.6
cigarillo/1.0.0 IsoformSwitchAnalyzeR/2.10.0 scCustomize/3.2.4
circlize/0.4.17 /2.8.0 (202601) /3.0.1 (202601)
/0.4.16 (202601) isotone/1.1-2 scDblFinder/1.24.0
CircStats/0.2-7 ISwR/2.0-11 /1.22.0 (202601)
/0.2-6 (202601) /2.0-10 (202601) SCDC/0.0.0.9000
cisTopic/0.3.0 iterators/1.0.14 scde/2.38.0
/0.2.1 (202601) iterpc/0.4.2 /2.36.0 (202601)
class/7.3-23 itertools/0.1-3 scds/1.26.0
ClassifyR/3.14.0 jackstraw/1.3.17 /1.24.0 (202601)
classInt/0.4-11 janeaustenr/1.0.0 scistreer/1.2.0
cli/3.6.5 janitor/2.2.1 SciViews/0.9-13.2
clipr/0.8.0 JASPAR2014/1.46.0 scMerge/1.26.0
clisymbols/1.2.0 /1.44.0 (202601) /1.24.0 (202601)
clock/0.7.4 JASPAR2020/0.99.10 scoper/1.4.0
/0.7.3 (202601) jcolors/0.0.5 /1.3.0 (202601)
clue/0.3-66 job/0.3.1 SCORPIUS/1.0.10
cluster/2.1.8.1 jomo/2.7-6 /1.0.9 (202601)
ClusterFoldSimilarity/1.6.0 jose/1.2.1 SCP/0.5.1
/1.4.0 (202601) jpeg/0.1-11 scPower/1.0.4
clusterGeneration/1.3.8 jquerylib/0.1.4 /1.0.0 (202601)
clusterProfiler/4.18.4 jsonlite/2.0.0 scProportionTest/0.0.0.9000
/4.16.0 (202601) jsonvalidate/1.5.0 SCpubr/3.0.1
ClusterR/1.3.6 juicyjuice/0.1.0 /2.0.2 (202601)
/1.3.3 (202601) kableExtra/1.4.0 scran/1.38.0
clustifyr/1.22.0 KEGGdzPathwaysGEO/1.48.0 /1.36.0 (202601)
/1.20.0 (202601) /1.46.0 (202601) scRecover/1.26.0
clustree/0.5.1 KEGGgraph/1.70.0 /1.24.0 (202601)
cmdfun/1.0.2 /1.68.0 (202601) scRepertoire/2.6.2
cmprsk/2.2-12 KEGGREST/1.50.0 /2.4.0 (202601)
cn.mops/1.56.0 /1.48.0 (202601) scrime/1.3.5
/1.54.0 (202601) Kendall/2.2.2 scRNAseq/2.24.0
CNEr/1.46.0 /2.2.1 (202601) /2.22.0 (202601)
/1.43.0 (202601) keras/2.16.0 scry/1.22.0
coda/0.19-4.1 /2.15.0 (202601) /1.20.0 (202601)
CodeAndRoll2/2.7.0 kernlab/0.9-33 scSHC/0.1.0
codetools/0.2-20 KernSmooth/2.23-26 sctransform/0.4.3
coin/1.4-3 klaR/1.7-3 /0.4.2 (202601)
collapse/2.1.6 km.ci/0.5-6 scuttle/1.20.0
/2.1.2 (202601) KMsurv/0.1-6 /1.18.0 (202601)
collections/0.3.9 knitr/1.51 segmented/2.2-0
/0.3.8 (202601) /1.50 (202601) /2.1-4 (202601)
coloc/5.2.3 knn.covertree/1.1 selectr/0.5-1
colorRamp2/0.1.0 /1.0 (202601) /0.4-2 (202601)
colorRamps/2.3.4 kohonen/3.0.12 sendmailR/1.4-0
colorspace/2.1-2 koRpus/0.13-8 Seqinfo/1.0.0
/2.1-1 (202601) ks/1.15.1 seqinr/4.2-36
colourpicker/1.3.0 kSamples/1.2-12 seqLogo/1.76.0
combinat/0.0-8 /1.2-10 (202601) /1.74.0 (202601)
commonmark/2.0.0 L1pack/0.62 seqPattern/1.42.0
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ComplexHeatmap/2.26.0 label.switching/1.8 seriation/1.5.8
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compositions/2.0-9 labelled/2.16.0 sessioninfo/1.2.3
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CompQuadForm/1.4.4 laeken/0.5.3 sets/1.0-25
/1.4.3 (202601) Lahman/13.0-0 Seurat/5.4.0
concaveman/1.2.0 /12.0-0 (202601) /5.3.0 (202601)
/1.1.0 (202601) lambda.r/1.2.4 Seurat.utils/2.8.5
condiments/1.18.0 languageserver/0.3.16 SeuratData/0.2.1
/1.16.0 (202601) LaplacesDemon/16.1.6 SeuratDisk/0.0.0.9021
config/0.3.2 lars/1.3 SeuratObject/5.3.0
conflicted/1.2.0 later/1.4.5 /5.1.0 (202601)
conos/1.5.2 /1.4.2 (202601) SeuratWrappers/0.4.0
conquer/1.3.3 lattice/0.22-7 sf/1.0-24
ConsensusClusterPlus/1.74.0 latticeExtra/0.6-31 /1.0-21 (202601)
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contfrac/1.1-12 lava/1.8.2 sfsmisc/1.1-23
convert/1.86.0 /1.8.1 (202601) /1.1-20 (202601)
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coRanking/0.2.5 lda/1.5.2 shades/1.4.0
corpcor/1.6.10 leaps/3.2 shadowtext/0.1.6
corrplot/0.95 LearnBayes/2.15.1 /0.1.4 (202601)
corrr/0.4.5 leiden/0.4.3.1 shape/1.4.6.1
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covr/3.6.5 leidenbase/0.1.36 /1.2.0 (202601)
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cowplot/1.2.0 lfa/2.10.0 /1.10.0 (202601)
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coxme/2.2-22 lfe/3.1.1 shinyalert/3.1.0
cpp11/0.5.2 lgr/0.5.0 shinyBS/0.63.0
crawdad/1.0.1 /0.4.4 (202601) /0.61.1 (202601)
crayon/1.5.3 lhs/1.2.0 shinycssloaders/1.1.0
credentials/2.0.3 libcoin/1.0-10 shinydashboard/0.7.3
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crew/1.3.0 /1.0.4 (202601) /2.0.5 (202601)
crochet/2.3.0 liger/2.0.1 shinyFiles/0.9.3
crossmap/0.4.3 lightgbm/4.6.0 shinyhelper/0.3.2
/0.4.2 (202601) limma/3.66.0 shinyjs/2.1.1
crosstalk/1.2.2 /3.64.1 (202601) /2.1.0 (202601)
/1.2.1 (202601) limmaGUI/1.86.0 shinystan/2.7.0
crul/1.6.0 /1.84.0 (202601) /2.6.0 (202601)
/1.5.0 (202601) limSolve/2.0.1 (202604) shinythemes/1.2.0
cubature/2.1.4-1 /2.0 (202601) shinyTree/0.3.1
/2.1.4 (202601) LinkedMatrix/1.4.0 shinyWidgets/0.9.0
Cubist/0.5.1 linprog/0.9-4 ShortRead/1.68.0
/0.5.0 (202601) lintr/3.3.0-1 /1.66.0 (202601)
cummeRbund/2.50.0 /3.2.0 (202601) siggenes/1.84.0
curl/7.0.0 lisi/1.0 /1.82.0 (202601)
/6.3.0 (202601) listenv/0.10.0 Signac/1.16.0
cvar/0.6 /0.9.1 (202601) /1.14.0 (202601)
/0.5 (202601) listviewer/4.0.0 SIMLR/1.36.0
cvAUC/1.1.4 litedown/0.9 /1.34.0 (202601)
CVST/0.2-3 /0.7 (202601) simona/1.8.0
cvTools/0.3.3 littler/0.3.21 /1.6.0 (202601)
cyclocomp/1.1.1 lmds/0.1.0 simpleSeg/1.12.0
cyCONDOR/0.3.1 lme4/1.1-38 simplifyEnrichment/2.4.0
/0.2.1 (202601) /1.1-37 (202601) /2.2.0 (202601)
CytoDx/1.30.0 lmerTest/3.2-0 SingleCellExperiment/1.32.0
/1.28.0 (202601) /3.1-3 (202601) /1.30.1 (202601)
CytofRUV/0.1 lmodel2/1.7-4 SingleCellSignalR/2.0.1
cytolib/2.22.0 lmom/3.2 /1.20.0 (202601)
/2.20.0 (202601) Lmoments/1.3-2 singleCellTK/2.20.0
cytomapper/1.22.0 /1.3-1 (202601) /2.18.0 (202601)
CytoML/2.22.0 lmtest/0.9-40 SingleR/2.12.0
/2.20.0 (202601) lobstr/1.1.3 /2.10.0 (202601)
CytoNorm/2.0.9 /1.1.2 (202601) sitmo/2.0.2
data.table/1.18.0 locfdr/1.1-8 SkewHyperbolic/0.4-2
/1.17.6 (202601) locfit/1.5-9.12 slackr/3.3.1
data.tree/1.2.0 logger/0.4.1 slam/0.1-55
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DatabaseLinke.R/1.7.0 logging/0.10-108 /0.3.2 (202601)
DataEditR/0.1.5 lokern/1.1-12 slingshot/2.18.0
DBI/1.2.3 longitudinal/1.1.13 /2.16.0 (202601)
DBItest/1.8.2 longmemo/1.1-4 sm/2.2-6.0
dbplyr/2.5.1 /1.1-3 (202601) smoof/1.6.0.3
/2.5.0 (202601) loo/2.9.0 smoother/1.3
dbscan/1.2.4 /2.8.0 (202601) sn/2.1.1
/1.2.2 (202601) lpSolve/5.6.23 sna/2.8
dcanr/1.26.0 lpSolveAPI/5.5.2.0-17.14 snakecase/0.11.1
ddalpha/1.3.16 lpsymphony/1.38.0 snow/0.4-4
DDRTree/0.1.5 /1.36.0 (202601) SnowballC/0.7.1
deal/1.2-42 lsa/0.73.4 snowfall/1.84-6.3
debugme/1.2.0 /0.73.3 (202601) snowflakeauth/0.2.1
declared/0.25 LSD/4.1-0 snpStats/1.60.0
DeconRNASeq/1.50.0 lsmeans/2.30-2 /1.58.0 (202601)
decontX/1.8.0 lubridate/1.9.4 softImpute/1.4-3
/1.6.0 (202601) lwgeom/0.2-15 som/0.3-5.2
decoupleR/2.16.0 /0.2-14 (202601) SomaticSignatures/2.46.0
/2.14.0 (202601) LymphoSeq/1.38.0 /2.44.0 (202601)
deepSNV/1.56.0 /1.36.0 (202601) SoupX/1.6.2
/1.54.0 (202601) LymphoSeqDB/0.99.2 sourcetools/0.1.7-1
DEGreport/1.46.0 M3Drop/1.36.0 sp/2.2-0
/1.44.0 (202601) /1.34.0 (202601) spacexr/1.2.0
DEGseq/1.64.0 MAAPER/1.1.1 /1.0.0 (202601)
/1.62.0 (202601) magic/1.6-1 spam/2.11-3
Delaporte/8.4.3 magick/2.9.0 /2.11-1 (202601)
/8.4.1 (202601) /2.8.7 (202601) SPARK/1.1.1
DelayedArray/0.36.0 magrittr/2.0.4 sparkline/2.0
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DelayedMatrixStats/1.32.0 manipulate/1.0.1 /1.8.0 (202601)
/1.30.0 (202601) manipulateWidget/0.11.2 SparseM/1.84-2
deldir/2.0-4 /0.11.1 (202601) sparseMatrixStats/1.22.0
deMULTIplex/1.0.2 mapproj/1.2.12 /1.20.0 (202601)
demuxmix/1.12.0 maps/3.4.3 sparsepca/0.1.2
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dendextend/1.19.1 MarkdownHelpers/1.1.0 /0.2-2 (202601)
/1.19.0 (202601) MarkdownReports/4.8.0 sparsevctrs/0.3.5
dendsort/0.3.4 marray/1.88.0 /0.3.4 (202601)
densEstBayes/1.0-2.2 /1.86.0 (202601) spatial/7.3-18
densityClust/0.3.3 maSigPro/1.82.0 spatialEco/2.0-3
densvis/1.20.1 /1.80.0 (202601) /2.0-2 (202601)
/1.18.0 (202601) MASS/7.3-65 SpatialExperiment/1.20.0
DEoptimR/1.1-4 MAST/1.36.0 /1.18.1 (202601)
/1.1-3-1 (202601) /1.33.0 (202601) SpatialExperimentIO/1.2.0
Deriv/4.2.0 mathjaxr/2.0-0 /1.0.0 (202601)
/4.1.6 (202601) /1.8-0 (202601) SpatialPCA/1.3.0
desc/1.4.3 matlab/1.0.4.1 spatstat/3.5-0
descr/1.1.8 Matrix/1.7-4 /3.3-3 (202601)
DescTools/0.99.60 /1.7-3 (202601) spatstat.data/3.1-9
DESeq2/1.50.2 matrixcalc/1.0-6 /3.1-6 (202601)
/1.48.1 (202601) MatrixEQTL/2.3 spatstat.explore/3.6-0
DEsingle/1.30.0 MatrixExtra/0.1.15 /3.4-3 (202601)
/1.28.0 (202601) MatrixGenerics/1.22.0 spatstat.geom/3.6-1
deSolve/1.40 /1.20.0 (202601) /3.4-1 (202601)
destiny/3.24.0 MatrixModels/0.5-4 spatstat.linnet/3.4-0
/3.22.0 (202601) matrixStats/1.5.0 /3.2-6 (202601)
devtools/2.4.6 matrixTests/0.2.3.1 spatstat.model/3.5-0
/2.4.5 (202601) maxLik/1.5-2.2 /3.3-6 (202601)
DEWSeq/1.24.0 /1.5-2.1 (202601) spatstat.random/3.4-3
/1.22.0 (202601) maxstat/0.7-26 /3.4-1 (202601)
DEXSeq/1.56.0 mclogit/0.9.15 spatstat.sparse/3.1-0
/1.54.1 (202601) /0.9.6 (202601) spatstat.univar/3.1-5
dfidx/0.2-0 mclust/6.1.2 /3.1-3 (202601)
/0.1-2 (202601) /6.1.1 (202601) spatstat.utils/3.2-1
dfoptim/2023.1.0 mcmc/0.9-8 /3.1-4 (202601)
diagram/1.6.5 MCMCpack/1.7-1 spd/2.0-1
DiagrammeR/1.0.11 MCMCprecision/0.4.2 spData/2.3.4
dials/1.4.2 /0.4.0 (202601) spdep/1.4-1
/1.4.0 (202601) mco/1.17 /1.3-13 (202601)
DiceDesign/1.10 mcprogress/0.1.1 speckle/1.10.0
DiceKriging/1.6.1 mda/0.5-5 /1.8.0 (202601)
/1.6.0 (202601) megadepth/1.20.0 Spectra/1.20.1
dichromat/2.0-0.1 /1.18.0 (202601) /1.18.2 (202601)
DiffBind/3.20.0 MEGENA/1.3.7 Spectre/1.3.0
/3.18.0 (202601) memisc/0.99.31.8.3 /1.2.0 (202601)
diffcyt/1.30.0 memoise/2.0.1 speedglm/0.3-5
/1.28.0 (202601) memuse/4.2-3 SPIAT/1.12.0
diffobj/0.3.6 MetaboCoreUtils/1.18.1 /1.10.0 (202601)
diffusionMap/1.2.0 /1.16.1 (202601) spicyR/1.22.0
digest/0.6.39 metaboliteIDmapping/1.0.0 splancs/2.01-45
/0.6.37 (202601) metadat/1.4-0 splatter/1.34.0
dimRed/0.2.7 metafor/4.8-0 /1.32.0 (202601)
diptest/0.77-2 metap/1.13 splitstackshape/1.4.8
/0.77-1 (202601) /1.12 (202601) splots/1.76.0
dir.expiry/1.18.0 metapod/1.18.0 /1.74.0 (202601)
/1.16.0 (202601) /1.16.0 (202601) spls/2.3-2
DirichletMultinomial/1.52.0 Mfuzz/2.70.0 /2.2-3 (202601)
/1.50.0 (202601) /2.68.0 (202601) SpotClean/1.12.0
DirichletReg/0.7-2 mgcv/1.9-4 /1.10.0 (202601)
distillery/1.2-2 /1.9-3 (202601) SPOTlight/1.14.0
distinct/1.22.0 mgu74av2cdf/2.18.0 /1.12.1 (202601)
/1.20.0 (202601) mHMMbayes/1.1.1 SpotSweeper/1.6.0
distr/2.9.7 /1.1.0 (202601) /1.4.0 (202601)
distributional/0.6.0 mice/3.19.0 SQUAREM/2021.1
/0.5.0 (202601) /3.18.0 (202601) sSeq/1.48.0
DistributionUtils/0.6-2 micEcon/0.6-20 /1.46.0 (202601)
dittoSeq/1.22.0 /0.6-18 (202601) stabledist/0.7-2
/1.20.0 (202601) microbenchmark/1.5.0 STACAS/2.3.0
divo/1.0.2 miloR/2.6.0 StanHeaders/2.32.10
dlm/1.1-6.1 /2.4.1 (202601) stars/0.7-0
DNAcopy/1.84.0 mime/0.13 /0.6-8 (202601)
/1.82.0 (202601) miniUI/0.1.2 startupmsg/1.0.0
DNAshapeR/1.38.0 minpack.lm/1.2-4 STATegRa/1.46.0
/1.36.0 (202601) minqa/1.2.8 /1.44.0 (202601)
dnet/1.1.7 mirai/2.5.3 statmod/1.5.1
DO.db/2.9 mirbase.db/1.2.1 (202604) /1.5.0 (202601)
doBy/4.7.1 misc3d/0.9-1 statnet/2019.6
/4.6.27 (202601) miscTools/0.6-28 statnet.common/4.13.0
docopt/0.7.2 missMDA/1.20 /4.12.0 (202601)
doFuture/1.2.0 /1.19 (202601) STdeconvolve/1.3.2
/1.1.1 (202601) mitml/0.4-5 strawr/0.0.92
doMC/1.3.8 mitools/2.4 stringdist/0.9.15
doParallel/1.0.17 mixOmics/6.34.0 Stringendo/0.7.0
doRNG/1.8.6.2 /6.32.0 (202601) stringfish/0.18.0
dorothea/1.22.0 mixsqp/0.3-54 /0.16.0 (202601)
/1.20.0 (202601) mixtools/2.0.0.1 stringi/1.8.7
DOSE/4.4.0 MKmisc/1.9 stringr/1.6.0
/4.2.0 (202601) mlapi/0.1.1 /1.5.1 (202601)
doSNOW/1.0.20 mlbench/2.1-6 striprtf/0.6.0
DOT/0.1 MLmetrics/1.1.3 strucchange/1.5-4
dotCall64/1.2 mlogit/1.1-3 styler/1.11.0
DoubletFinder/2.0.6 /1.1-2 (202601) /1.10.3 (202601)
downlit/0.4.5 mlr/2.19.3 subselect/0.16.0
/0.4.4 (202601) /2.19.2 (202601) SummarizedExperiment/1.40.0
downloader/0.4.1 mlr3/1.3.0 /1.38.1 (202601)
dowser/2.4.0 mlr3learners/0.14.0 superpc/1.12
/2.3 (202601) mlr3measures/1.2.0 SuppDists/1.1-9.9
dplyr/1.1.4 mlr3misc/0.19.0 supraHex/1.46.3
dqrng/0.4.1 mlr3pipelines/0.10.0 /1.31.1 (202601)
drc/3.0-1 mlr3tuning/1.5.1 survey/4.4-8
DRIMSeq/1.38.0 mlrMBO/1.1.5.1 /4.4-2 (202601)
/1.36.0 (202601) mmand/1.6.3 survival/3.8-3
DropletQC/0.0.0.9000 mnormt/2.1.1 survminer/0.5.1
DropletUtils/1.30.0 mockery/0.4.5 /0.5.0 (202601)
/1.28.0 (202601) /0.4.4 (202601) survMisc/0.5.6
drosophila2probe/2.18.0 modeldata/1.5.1 susieR/0.14.2
DRR/0.0.4 /1.4.0 (202601) sva/3.58.0
dsb/2.0.1 modelenv/0.2.0 /3.56.0 (202601)
/2.0.0 (202601) ModelMetrics/1.2.2.2 svDialogs/1.1.2
DT/0.34.0 modelr/0.1.11 /1.1.0 (202601)
/0.33 (202601) modeltools/0.2-24 svglite/2.2.2
dtplyr/1.3.2 moe430acdf/2.18.0 /2.2.1 (202601)
/1.3.1 (202601) moe430aprobe/2.18.0 svgPanZoom/0.3.4
dtw/1.23-1 MOFA2/1.20.1 svGUI/1.0.2
duckdb/1.4.3 /1.18.0 (202601) /1.0.1 (202601)
duckplyr/1.1.3 monocle/2.38.0 svMisc/1.4.3
DWLS/0.1.0 /2.36.0 (202601) svUnit/1.0.8
dygraphs/1.1.1.6 monocle3/1.4.26 /1.0.6 (202601)
dynamicTreeCut/1.63-1 mosdef/1.6.0 SwissAir/1.1.6
DynDoc/1.88.0 /1.4.1 (202601) sylly/0.1-6
/1.86.0 (202601) motifmatchr/1.32.0 synchronicity/1.3.10
dynlm/0.3-6 /1.30.0 (202601) sys/3.4.3
dynparam/1.0.2 motifStack/1.54.0 systemfit/1.1-30
dynutils/1.0.12 /1.52.0 (202601) systemfonts/1.3.1
/1.0.11 (202601) mouse430a2cdf/2.18.0 /1.2.3 (202601)
dynwrap/1.2.5 mouse430a2probe/2.18.0 systemPipeR/2.16.3
/1.2.4 (202601) MouseGastrulationData/1.24.0 /2.14.2 (202601)
e1071/1.7-17 msa/1.42.0 systemPipeRdata/2.14.2
/1.7-16 (202601) /1.40.0 (202601) /2.12.2 (202601)
earth/5.3.5 MsBackendMgf/1.18.0 tables/0.9.33
/5.3.4 (202601) /1.16.0 (202601) /0.9.31 (202601)
easy.utils/0.1.0 MsCoreUtils/1.22.1 tailor/0.1.0
EBImage/4.52.0 /1.20.0 (202601) TailRank/3.2.4
/4.50.0 (202601) msigdb/1.18.0 TCGAutils/1.30.2
EBSeq/2.8.0 /1.16.0 (202601) /1.28.0 (202601)
/2.6.0 (202601) msigdbr/25.1.1 tclust/2.1-2
Ecdat/0.4.7 /24.1.0 (202601) /2.1-0 (202601)
/0.4-2 (202601) MuDataSeurat/0.0.0.9000 TeachingDemos/2.13
Ecfun/0.4.0 muhaz/1.2.6.4 tensor/1.5.1
/0.3-6 (202601) multcomp/1.4-29 tensorA/0.36.2.1
Ecume/0.9.2 /1.4-28 (202601) tensorflow/2.20.0
EDASeq/2.44.0 multcompView/0.1-10 /2.16.0 (202601)
/2.42.0 (202601) MultiAssayExperiment/1.36.1 TENxPBMCData/1.28.0
edgeR/4.8.2 /1.34.0 (202601) /1.26.0 (202601)
/4.6.2 (202601) multicool/1.0.1 tergm/4.2.2
eds/1.12.0 multiGSEA/1.20.0 terra/1.8-93
/1.10.0 (202601) /1.18.0 (202601) /1.8-54 (202601)
effects/4.2-4 multinichenetr/2.1.0 tester/0.3.0
/4.2-2 (202601) multipanelfigure/2.1.6 /0.2.0 (202601)
egg/0.4.5 multitaper/1.0-17 testthat/3.3.2
EGSEA/1.38.0 multtest/2.66.0 /3.2.3 (202601)
/1.36.0 (202601) /2.64.0 (202601) texreg/1.39.5
EGSEAdata/1.38.0 munsell/0.5.1 /1.39.4 (202601)
/1.36.0 (202601) muscat/1.24.0 text2vec/0.6.6
ellipse/0.5.0 /1.22.0 (202601) /0.6.4 (202601)
ellipsis/0.3.2 MuSiC/1.0.0 textshaping/1.0.4
elliptic/1.5-1 MuSiC2/0.1.0 /1.0.1 (202601)
/1.4-0 (202601) mutoss/0.1-14 tfautograph/0.3.2
emdbook/1.3.14 /0.1-13 (202601) TFBSTools/1.48.0
/1.3.13 (202601) mvoutlier/2.1.1 /1.46.0 (202601)
emdist/0.3-3 mvtnorm/1.3-3 TFisher/0.2.0
emmeans/2.0.1 N2R/1.0.3 TFMPvalue/0.0.9
/1.11.1 (202601) nabor/0.5.0 tfruns/1.5.4
emoa/0.5-3 NADA/1.6-1.2 /1.5.3 (202601)
EMT/1.3.2 /1.6-1.1 (202601) TH.data/1.1-5
/1.3.1 (202601) naivebayes/1.0.0 /1.1-3 (202601)
energy/1.7-12 nanoarrow/0.7.0-2 this.path/2.7.1
EnhancedVolcano/1.28.2 /0.6.0-1 (202601) /2.7.0 (202601)
/1.26.0 (202601) nanonext/1.7.2 threejs/0.3.4
enrichplot/1.30.4 naturalsort/0.1.3 tibble/3.3.1
/1.28.2 (202601) NbClust/3.0.1 /3.3.0 (202601)
enrichR/3.4 NBPSeq/0.3.1 tictoc/1.2.1
EnsDb.Hsapiens.v79/2.99.0 ncdfFlow/2.56.0 tidydr/0.0.6
EnsDb.Hsapiens.v86/2.99.0 /2.54.0 (202601) tidygraph/1.3.1
EnsDb.Mmusculus.v79/2.99.0 Nebulosa/1.20.0 tidymodels/1.4.1
ensembldb/2.34.0 /1.18.0 (202601) /1.3.0 (202601)
/2.32.0 (202601) network/1.19.0 tidyr/1.3.2
entropy/1.3.2 networkD3/0.4.1 /1.3.1 (202601)
EnvStats/3.1.0 networkDynamic/0.11.5 tidyselect/1.2.1
Epi/2.61 networkLite/1.1.0 tidytext/0.4.3
/2.59 (202601) nichenetr/2.2.0 /0.4.2 (202601)
EpiDISH/2.26.0 nleqslv/3.3.5 tidytree/0.4.7
/2.24.0 (202601) nlme/3.1-168 /0.4.6 (202601)
erccdashboard/1.44.0 nloptr/2.2.1 tidyverse/2.0.0
/1.42.0 (202601) NLP/0.3-2 tiff/0.1-12
ergm/4.11.0 nls2/0.3-4 tigger/1.1.2
/4.9.0 (202601) nlstools/2.1-0 /1.1.0 (202601)
ergm.count/4.1.3 NMF/0.28 timechange/0.3.0
/4.1.2 (202601) NMOF/2.11-0 timeDate/4051.111
ergm.multi/0.3.0 /2.10-1 (202601) /4041.110 (202601)
escape/2.6.2 nnet/7.3-20 timeSeries/4052.112
/2.4.0 (202601) nnls/1.6 /4041.111 (202601)
escheR/1.10.0 NOISeq/2.54.0 tinytex/0.58
/1.8.0 (202601) /2.52.0 (202601) /0.57 (202601)
estimability/1.5.1 nor1mix/1.3-3 tis/1.39
etm/1.1.2 nortest/1.0-4 tkrplot/0.0-30
etrunct/0.1 Nozzle.R1/1.1-1.1 tkWidgets/1.88.0
eulerr/7.0.4 numbat/1.5.1 /1.86.0 (202601)
/7.0.2 (202601) /1.4.2 (202601) tm/0.7-17
europepmc/0.4.3 numDeriv/2016.8-1.1 /0.7-16 (202601)
evaluate/1.0.5 nycflights13/1.0.2 TMB/1.9.19
/1.0.3 (202601) officer/0.7.2 /1.9.17 (202601)
evd/2.3-7.1 /0.6.10 (202601) tmvnsim/1.0-2
evmix/2.12 oligo/1.74.0 TOAST/1.24.0
Exact/3.3 /1.72.0 (202601) /1.22.0 (202601)
exactextractr/0.10.1 oligoClasses/1.72.0 tokenizers/0.3.0
/0.10.0 (202601) /1.70.0 (202601) topGO/2.62.0
exactRankTests/0.8-35 oompaBase/3.2.11 /2.59.0 (202601)
ExperimentHub/3.0.0 oompaData/3.1.5 topicmodels/0.2-17
/2.16.0 (202601) openCyto/2.22.0 trackViewer/1.46.0
expm/1.0-0 /2.20.0 (202601) /1.44.0 (202601)
extraDistr/1.10.0.1 OpenImageR/1.3.0 tradeSeq/1.24.0
/1.10.0 (202601) openssl/2.3.4 /1.22.0 (202601)
extrafont/0.20 /2.3.3 (202601) TrajectoryUtils/1.18.0
/0.19 (202601) openxlsx/4.2.8.1 /1.16.1 (202601)
extrafontdb/1.1 /4.2.8 (202601) transport/0.15-4
/1.0 (202601) optextras/2019-12.4 treeio/1.34.0
extRemes/2.2-1 optimx/2025-4.9 /1.32.0 (202601)
factoextra/1.0.7 optparse/1.7.5 triebeard/0.4.1
FactoMineR/2.13 ordinal/2025.12-29 trimcluster/0.2-0
/2.11 (202601) /2023.12-4.1 (202601) /0.1-5 (202601)
fail/1.3 org.At.tair.db/3.22.0 truncdist/1.0-2
fANCOVA/0.6-1 /3.21.0 (202601) truncnorm/1.0-9
fansi/1.0.7 org.Dm.eg.db/3.22.0 truncreg/0.2-5
/1.0.6 (202601) /3.21.0 (202601) trust/0.1-8
farver/2.1.2 org.Dr.eg.db/3.22.0 TSCAN/1.48.0
fastcluster/1.3.0 /3.21.0 (202601) /1.46.0 (202601)
fastDummies/1.7.5 org.Gg.eg.db/3.22.0 tseries/0.10-59
fastICA/1.2-7 /3.21.0 (202601) /0.10-58 (202601)
fastmap/1.2.0 org.Hs.eg.db/3.22.0 tsna/0.3.6
fastmatch/1.1-6 /3.21.0 (202601) tsne/0.1-3.1
fastmatrix/0.6-6 org.Mm.eg.db/3.22.0 TSP/1.2.6
/0.5-9017 (202601) /3.21.0 (202601) /1.2-5 (202601)
fBasics/4052.98 org.Rn.eg.db/3.22.0 TTR/0.24.4
/4041.97 (202601) /3.21.0 (202601) tune/2.0.1
FD/1.0-12.3 org.Sc.sgd.db/3.22.0 /1.3.0 (202601)
fda/6.3.0 /3.21.0 (202601) tweeDEseqCountData/1.48.0
FDb.InfiniumMethylation.hg19/2.2.0 OrganismDbi/1.52.0 /1.46.0 (202601)
fdrtool/1.2.18 /1.50.0 (202601) tweenr/2.0.3
fds/1.8 orientlib/0.10.5 TxDb.Celegans.UCSC.ce6.ensGene/3.2.2
feather/0.4.0 orthogene/1.16.1 TxDb.Dmelanogaster.UCSC.dm3.ensGene/3.2.2
/0.3.5 (202601) orthopolynom/1.0-6.1 TxDb.Hsapiens.UCSC.hg18.knownGene/3.2.2
ff/4.5.2 osfr/0.2.9 TxDb.Hsapiens.UCSC.hg19.knownGene/3.22.1
fftw/1.0-9 otel/0.2.0 /3.2.2 (202601)
fftwtools/0.9-11 packrat/0.9.3 TxDb.Hsapiens.UCSC.hg38.knownGene/3.22.0
fGarch/4052.93 PADOG/1.52.0 /3.21.0 (202601)
/4033.92 (202601) /1.50.0 (202601) TxDb.Mmusculus.UCSC.mm10.knownGene/3.10.0
fgsea/1.36.2 PAIRADISE/1.26.0 TxDb.Mmusculus.UCSC.mm9.knownGene/3.2.2
/1.34.0 (202601) /1.24.1 (202601) TxDb.Rnorvegicus.UCSC.rn4.ensGene/3.2.2
fields/17.1 pak/0.9.2 txdbmaker/1.6.2
/16.3.1 (202601) /0.9.0 (202601) /1.4.1 (202601)
FigR/0.1.0 paletteer/1.7.0 tximeta/1.28.1
filelock/1.0.3 /1.6.0 (202601) /1.26.1 (202601)
findpython/1.0.9 palmerpenguins/0.1.1 tximport/1.38.2
fit.models/0.64 pals/1.10 /1.36.0 (202601)
fitdistrplus/1.2-4 pamr/1.57 tximportData/1.38.0
/1.2-2 (202601) pan/1.9 /1.36.0 (202601)
FLAMES/2.4.1 pander/0.6.6 tzdb/0.5.0
/2.2.0 (202601) paradox/1.0.1 UCell/2.14.0
flashClust/1.01-2 parallelDist/0.2.7 /2.12.0 (202601)
flexdashboard/0.6.2 /0.2.6 (202601) ucminf/1.2.2
flexmix/2.3-20 parallelly/1.46.1 UCSC.utils/1.6.1
float/0.3-3 /1.45.0 (202601) /1.4.0 (202601)
flowAI/1.40.0 parallelMap/1.5.1 umap/0.2.10.0
/1.38.0 (202601) ParamHelpers/1.14.2 unglue/0.1.0
flowAssist/0.0.0.9000 parsnip/1.4.1 units/1.0-0
flowClust/3.48.0 /1.3.2 (202601) /0.8-7 (202601)
/3.46.0 (202601) party/1.3-18 universalmotif/1.28.0
flowCore/2.22.1 partykit/1.2-24 /1.26.2 (202601)
/2.20.0 (202601) pastecs/1.4.2 UpSetR/1.4.0
FlowSOM/2.18.0 patchwork/1.3.2 urca/1.3-4
/2.16.0 (202601) /1.3.0 (202601) urlchecker/1.0.1
flowStats/4.22.0 pathview/1.50.0 urltools/1.7.3.1
/4.20.0 (202601) /1.48.0 (202601) uroot/2.1-3
flowTrans/1.62.0 pbapply/1.7-4 useful/1.2.6.1
/1.60.0 (202601) /1.7-2 (202601) usethis/3.2.1
flowViz/1.74.0 pbdZMQ/0.3-14 /3.1.0 (202601)
/1.72.0 (202601) pbkrtest/0.5.5 utf8/1.2.6
flowWorkspace/4.22.1 /0.5.4 (202601) uuid/1.2-1
/4.20.0 (202601) pbmcapply/1.5.1 uwot/0.2.4
FNN/1.1.4.1 pbmcref.SeuratData/1.0.0 /0.2.3 (202601)
fontawesome/0.5.3 pbmcsca.SeuratData/3.0.0 V8/8.0.1
fontBitstreamVera/0.1.1 pcaExplorer/3.4.0 /6.0.4 (202601)
fontLiberation/0.1.0 /3.2.0 (202601) VAM/1.1.0
fontquiver/0.2.1 pcaMethods/2.2.0 varhandle/2.0.6
forcats/1.0.1 /2.0.0 (202601) variancePartition/1.40.1
/1.0.0 (202601) pcaPP/2.0-5 /1.38.0 (202601)
foreach/1.5.2 PCAtools/2.20.0 VariantAnnotation/1.56.0
forecast/9.0.0 pd.hugene.2.1.st/3.14.1 /1.54.1 (202601)
/8.24.0 (202601) pd.mogene.2.0.st/3.14.1 vars/1.6-1
foreign/0.8-90 pdftools/3.6.0 vcd/1.4-13
formatR/1.14 /3.5.0 (202601) vcfR/1.15.0
formattable/0.2.1 pdist/1.2.1 vctrs/0.6.5
Formula/1.2-5 PeacoQC/1.20.0 vdiffr/1.0.8
fortunes/1.5-4 /1.18.0 (202601) vegan/2.7-2
fpc/2.2-14 penalized/0.9-53 /2.7-1 (202601)
/2.2-13 (202601) /0.9-52 (202601) velocyto.R/0.6
fracdiff/1.5-3 Peptides/2.4.6 venn/1.12
fresh/0.2.2 perm/1.0-0.4 VennDiagram/1.8.2
/0.2.1 (202601) permute/0.9-8 /1.7.3 (202601)
fs/1.6.6 /0.9-7 (202601) verification/1.45
fst/0.9.8 perry/0.3.1 /1.44 (202601)
fstcore/0.10.0 PFAM.db/3.22.0 VGAM/1.1-14
furrr/0.3.1 /3.21.0 (202601) /1.1-13 (202601)
futile.logger/1.4.9 pfamAnalyzeR/1.10.0 VIM/7.0.0
/1.4.3 (202601) /1.8.0 (202601) /6.2.2 (202601)
futile.options/1.0.1 phangorn/2.12.1 vioplot/0.5.1
future/1.68.0 pheatmap/1.0.13 vip/0.4.5
/1.58.0 (202601) philentropy/0.10.0 /0.4.1 (202601)
future.apply/1.20.1 /0.9.0 (202601) vipor/0.4.7
/1.20.0 (202601) phyclust/0.1-34 viridis/0.6.5
fuzzyjoin/0.1.6.1 phylobase/0.8.12 viridisLite/0.4.2
/0.1.6 (202601) phylotate/1.3 visNetwork/2.1.4
gage/2.60.0 pillar/1.11.1 /2.1.2 (202601)
/2.58.0 (202601) /1.10.2 (202601) vroom/1.6.7
gageData/2.48.0 pinfsc50/1.3.0 /1.6.5 (202601)
/2.46.0 (202601) pixmap/0.4-14 vsn/3.78.0
gam/1.22-7 /0.4-13 (202601) /3.76.0 (202601)
/1.22-5 (202601) pkgbuild/1.4.8 waffle/1.0.2
gamlss/5.5-0 pkgconfig/2.0.3 waiter/0.2.5.1
/5.4-22 (202601) pkgdown/2.2.0 /0.2.5 (202601)
gamlss.data/6.0-7 /2.1.3 (202601) waldo/0.6.2
/6.0-6 (202601) pkgload/1.4.1 /0.6.1 (202601)
gamlss.dist/6.1-1 /1.4.0 (202601) warp/0.2.3
gamm4/0.2-7 pkgmaker/0.32.10 /0.2.1 (202601)
gargle/1.6.0 PKI/0.1-15 waveslim/1.8.5
/1.5.2 (202601) /0.1-14 (202601) webshot/0.5.5
gbRd/0.4.12 plm/2.6-7 WGCNA/1.73
gbutils/0.5.1 /2.6-6 (202601) whisker/0.4.1
/0.5 (202601) plogr/0.2.0 whoami/1.3.0
gcatest/2.10.0 plot3D/1.4.2 widgetTools/1.88.0
/2.8.0 (202601) /1.4.1 (202601) /1.86.0 (202601)
gclus/1.3.3 plotly/4.11.0 wiggleplotr/1.34.0
GCPtools/1.0.0 /4.10.4 (202601) /1.32.0 (202601)
gcrma/2.82.0 plotmo/3.7.0 withr/3.0.2
/2.80.0 (202601) /3.6.4 (202601) wk/0.9.5
gdata/3.0.1 plotrix/3.8-13 /0.9.4 (202601)
gdtools/0.4.4 /3.8-4 (202601) workflows/1.3.0
/0.4.2 (202601) pls/2.8-5 /1.2.0 (202601)
geepack/1.3.13 plyr/1.8.9 workflowsets/1.1.1
/1.3.12 (202601) plyranges/1.30.1 writexl/1.5.4
genefilter/1.92.0 /1.28.0 (202601) WriteXLS/6.8.0
/1.90.0 (202601) PMCMRplus/1.9.12 wrMisc/1.15.4
geneLenDataBase/1.46.0 png/0.1-8 /1.15.3.1 (202601)
/1.44.0 (202601) poilog/0.4.2.1 xbioc/0.1.19
GeneNet/1.2.17 poLCA/1.6.0.1 xergm.common/1.7.8
GeneOverlap/1.46.0 polspline/1.1.25 xfun/0.55
/1.44.0 (202601) Polychrome/1.5.4 /0.52 (202601)
geneplotter/1.88.0 polyclip/1.10-7 xgboost/3.1.3.1
/1.86.0 (202601) polylabelr/0.3.0 /1.7.11.1 (202601)
GeneralizedHyperbolic/0.8-7 polynom/1.4-1 XGR/1.1.9
generics/0.1.4 poorman/0.2.7 xlsx/0.6.5
GENIE3/1.32.0 posterior/1.6.1 xlsxjars/0.9.0
/1.30.0 (202601) poweRlaw/1.0.0 /0.6.1 (202601)
genio/1.1.2 powerTCR/1.30.0 XML/3.99-0.20
genomation/1.42.0 /1.28.0 (202601) /3.99-0.18 (202601)
/1.40.1 (202601) prabclus/2.3-5 xml2/1.5.1
GenomeInfoDb/1.46.2 /2.3-4 (202601) /1.3.8 (202601)
/1.44.0 (202601) pracma/2.4.6 xmlparsedata/1.0.5
GenomeInfoDbData/1.2.15 /2.4.4 (202601) xopen/1.0.1
/1.2.14 (202601) praise/1.0.0 xtable/1.8-4
genomeIntervals/1.66.0 precrec/0.14.5 xts/0.14.1
/1.64.0 (202601) preprocessCore/1.72.0 XVector/0.50.0
GenomicAlignments/1.46.0 /1.70.0 (202601) /0.48.0 (202601)
/1.44.0 (202601) preseqR/4.0.0 yaImpute/1.0-34.1
GenomicDataCommons/1.34.1 presto/1.0.0 yaml/2.3.12
/1.32.1 (202601) prettyunits/1.2.0 /2.3.10 (202601)
GenomicFeatures/1.62.0 primeviewprobe/2.18.0 YAPSA/1.36.1
/1.60.0 (202601) princurve/2.1.6 /1.34.0 (202601)
GenomicPlot/1.8.1 prismatic/1.1.2 yardstick/1.3.2
/1.6.0 (202601) pROC/1.19.0.1 yarrr/0.1.14
GenomicRanges/1.62.1 /1.18.5 (202601) /0.1.5 (202601)
/1.60.0 (202601) processx/3.8.6 yeast2.db/3.13.0
GenomicScores/2.22.0 prodlim/2025.04.28 yulab.utils/0.2.3
/2.20.0 (202601) profileModel/0.6.1 /0.2.0 (202601)
GenSA/1.1.15 profvis/0.4.0 zCompositions/1.5.0-5
/1.1.14.1 (202601) progress/1.2.3 /1.5.0-4 (202601)
geojsonR/1.1.2 progressr/0.18.0 zeallot/0.2.0
geometry/0.5.2 /0.15.1 (202601) zellkonverter/1.20.1
GEOquery/2.78.0 proj4/1.0-15 /1.18.0 (202601)
/2.76.0 (202601) projpred/2.10.0 zigg/0.0.2
geosphere/1.5-20 /2.8.0 (202601) zinbwave/1.32.0
gert/2.3.1 promises/1.5.0 /1.30.0 (202601)
/2.1.5 (202601) /1.3.3 (202601) zip/2.3.3
getopt/1.20.4 ProtGenerics/1.42.0 zlibbioc/1.54.0 (202604)
GetoptLong/1.1.0 /1.40.0 (202601) zoo/1.8-15
/1.0.5 (202601) proto/1.0.0 /1.8-14 (202601)
gfonts/0.2.0 proxy/0.4-29
gg.gap/1.3 /0.4-27 (202601)