Module installs -- generated 2026-05-07
Changes (last 90 days)
new: new software | update: newer version of existing software | older: older version | add: just another version | snapshot: snapshot
2026-05-06: new: FlashAttention/2.5.8
2026-04-30: new: R-base/4.6.0
2026-04-24: new: oneAPI/2025.3.2
2026-04-22:
- new:
LDAK/6.2 - update:
bolt-lmm/2.5
2026-04-21: update: R-base/4.5.3
2026-04-17: removed: cuda/13.0 - Requires newer Nvidia driver not available in our Ubuntu 22
2026-04-08:
- update:
cuda/13.0 - add:
cuda/12.9v2
2026-04-01: snapshot: julia-cbrg/202604 python-cbrg/202604 R-cbrg/202604
2026-03-17:
- new:
python-base/3.13.12 - update:
python-base/3.12.13
2026-03-11: new: Cromwell/92
2026-03-04: update: nextflow/25.10.4
2026-02-24:
- new:
Bismark/0.25.1 - update:
HOMER/5.1
2026-02-23: update: bowtie2/2.5.4
2026-02-13: new: RELION/5.0.1
2026-02-11: new: OpenMPI/5.0.9
Module installs
syntax: module / version ( latest snapshot )
ABySS/2.3.10 EMA/0.7.0 mixcr/3.0.13 R-dpclust3p/1.0.8
AdapterRemoval/2.3.4 emboss/6.6.0 modwt/20180112 R-natverse/20230822
alicevision/2.2.0 ensembl-vep/102.0 mosdepth/0.3.1 racon/1.4.21
alleleCount/4.0.0 fastp/0.23.4 mpileup2readcounts/1.0 /1.4.3
alphafold/3 fastq-pair/1.0 /1.0a regtools/1.0.0
annovar/20230914 fastq-tools/0.8.3 MTG-Link/2.4.1 RELION/5.0.1
/20191024 fastq_screen/0.14.1 mummer/3.23 repeatmasker/4.1.2
/20180416 fastqc/0.12.0 NCCL/2.26.5 rmats-turbo/20240918
arcasHLA/0.6.0 /0.11.9 netMHCpan/4.1b rmblast/2.10.0
ARCS/1.2.7 /0.11.5 nextflow/25.10.4 rna-star/2.7.11a
aria2/1.37.0 fftw/3.3.10 /25.04.7 /2.7.8a
aspera/3.9.9 fgbio/3.0.0 /24.10.4 /2.7.3a
/3.9.8 /1.5.1 /24.04.4 /2.7.1a
atacqc/20170728 /1.4.0 /24.04.3 /2.6.1d
avocato-deps/20230726 /20210122 /24.01.0b /2.6.0c
/20221121 fiji/20190409 /23.10.1 rsem/1.3.3
aws-cli/20220822 flash/1.2.11 /23.04.1 /1.2.31
bam-readcount/20201113 FlashAttention/2.5.8 ntCard/1.2.2 Rust/1.90.0
bamscale/1.0 flexbar/3.5.0 ntHits/1.0.2 /1.77.2
/0.0.5 freebayes/1.3.4 NVIDIA-all/current /1.51.0
bamtools/2.5.1 freesasa/2.0.3 octopus/20200902 salmon/1.8.0
bamutil/1.0.14 gatk/4.6.0.0 omero/5.2.4 /1.3.0
barcounter/20211216 /4.4.0.0 oneAPI/2025.3.2 sambamba/0.8.0
basemount/0.43.0.3595 /4.3.0.0v2 onetbb/2021.3.0 samblaster/0.1.24
basespace-cli/1.4.0 /4.2.0.0v2 openjdk/20.0.2 samtools/1.17
bbtools/38.90 gctree/20210514 /19.0.1 /1.16.1
bcftools/1.17 genrich/0.6.1 /18.0.2 sbt/1.4.5
/1.16 geos/3.10.1 /17.0.2 schlacount/0.2.0
bcl2fastq/2.20.0.422 /3.9.0 /16.0.2 /0.1.0
bedops/2.4.40 GffRead/0.12.7 /15.0.2 seqkit/0.12.1
bedtools/2.29.2 GMAP/20241120 /14.0.2 seqmonk/1.47.1
/2.27.1 go/1.18 /13.0.2 seqtk/20201102
/2.26.0 gsea/3.0 /12.0.2 sevenbridges/0.18.2
/2.25.0 gsl/2.6 /11.0.2 slaMEM/0.8.5
bedtools2/2.29.2 gtool/0.7.5 /10.0.2 snpeff/5.2.1
/2.27.1 guppy/4.2.2 /9.0.4 /5.0
/2.26.0 /3.3.3 /8u422b05 SNPsplit/0.3.2
/2.25.0 guppy-gpu/4.2.2 OpenMPI/5.0.9 snptest/2.5.2
BGEN/1.1.6 /3.3.3 pairtools/1.1.0 snver/0.5.3
Bismark/0.25.1 hdf5/1.12.1 pandaseq/2.11 SoloTE/1.09
blast/2.11.0 /1.10.7 parallel/20240522 sortmerna/2.1b
bolt-lmm/2.5 hdfview/3.1.1 pear/20210121 SPACEc/0.1.2
/2.4.1 HEST/1.2.0 perl/5.36.1 spaceranger/3.1.3
bowtie/1.2.3 HiC-Pro/3.1.0 phylip/3.697 /3.1.0
/1.2.1.1 hicExplorer/3.7.5 physlr/1.0.4 /2.1.0
bowtie2/2.5.4 hisat2/2.2.1 picard-tools/3.2.0 /1.3.1
/2.4.2 /2.2.0a /3.1.1 /1.2.2
/2.4.1 hmmcopy-utils/20160304 /2.27.5 split-pipe/1.5.1
/2.3.4.3 hmmer/3.4 /2.27.3 /1.4.2
/2.3.2 /3.3.2 /2.27.2 spoa/4.1.0
btllib/1.7.0 HOMER/5.1 /2.18.17 SQANTI3/5.3.3
bwa/0.7.18 /4.11.1 /2.3.0 /5.2
/0.7.17 htslib/1.18 plink/2.00a4.6 sqlite/3.37.2
bwa-mem2/2.2.1 /1.16 /1.90b7 /3.36.0
caveman/1.14.0 /1.10.2 /1.90b6.24 /3.35.0
ccs/4.2.0 /1.10 /1.07 sratoolkit/3.0.0
cdhit/4.8.1 /1.9 poa/20200403 /2.10.8
celescope/2.9.0 /1.8 pod5/0.2.4 /2.9.6
cellranger/10.0.0 /1.7 Porechop_ABI/0.5.0 STAR/2.7.11a
/9.0.0 /1.5 proj/8.1.1 /2.7.8a
/8.0.1 /1.3 /7.2.1 /2.7.3a
/7.2.0 igblast/1.19.0 py-capcruncher/0.3.8 /2.7.1a
/7.1.0 /1.16.0 py-cellbender/0.3.0 /2.6.1d
/7.0.1 igor/1.4.0 py-CellOracle/0.20.0 /2.6.0c
/7.0.0 igv/2.14.1 py-Faiss-gpu-cuVS/1.13.1 star-fusion/1.15.1
/6.1.2 /2.4.11v2 py-hail/0.2.128 /1.11.0
/6.1.1 ilastik/1.3.3post3 py-jax-gpu/0.4.23 stringtie/2.1.4
/6.0.1 imacyte/20200929 py-mira/2.1.0 subread/2.0.6
/5.0.0 impute2/2.3.2 py-nvidia-rapids/25.12 /2.0.3
/4.0.0 index-hopping-filter/1.1 /25.10 /2.0.1
/3.1.0 infercnv/current /25.08 /2.0.0
/3.0.1 jags/4.3.0 /24.12 subset-bam/1.1.0
/2.1.1 JASPAR-enrichment/20230913 /24.6 SWIG/4.2.1
cellranger-arc/2.1.0 java/21.0.2 pycharm/2020.1.3 TALR/0.0.1
/2.0.2 /17.0.10 python-base/3.13.12 TCRMatch/1.3
/2.0.0 /17.0.1 /3.12.13 tdrmapper/20210407
/1.0.1 jellyfish/2.3.0 /3.12.12 tensorflow2-cpu/202311
cellranger-atac/2.1.0 jq/1.6 /3.12.10 /2.16.1
/1.2.0 juicebox/2.10.01 /3.11.14 /2.14.0
cellsnp-lite/20210816 /1.9.8 /3.11.13 tensorflow2-gpu/2.16.1
cellxgene/20230703 julia/1.10.8 /3.11.11 /2.15.0
chips/2.1 /1.10.6 /3.11.3 TEpeaks/0.1
circos/0.69-9 /1.4.1 /3.10.19 Tigmint/1.2.10
clustalw/2.1 julia-cbrg/202604 /3.10.16 tophat/2.1.1
cmake/3.31.10 /202601 /3.10.13 trf/4.09.1
cnvkit/0.9.10 /202510 python-cbrg/202604 trim_galore/0.6.10
Cromwell/92 /202507 /202601 /0.6.5
cuda/13.0 /202504 /202510 trimadap/0.1
/12.9v2 /202501 /202507 trimmomatic/0.39
/12.9v1 /current /202504 trinityrnaseq/2.14.0
/12.3v2 kallisto/0.51.1 /202501 /2.11.0
/12.3v1 /0.48.0 /202410 trust4/1.1.2
/12.2v4 /0.46.1 /202407 /1.0.7
/12.2v3 Kraken/2.1.3 /202404 ucsctools/385
/12.2v2 lanceotron/1.2.7 /202401 /369
/12.2v1 /1.2.6 /202310 unet/20190409
/11.8 LDAK/6.2 /202307 Unicycler/0.5.1
/10.1 libBigWig/0.4.8 /current urlwrap/1.0.0
/10.0 /0.4.7 pytorch-gpu/2.0.1 vardictjava/1.8.2
/9.0 /0.4.4 /2.0.0 varscan/2.4.2
/8.0 linasm/1.13 qctool/2.2.0 vartrix/1.1.22
cuDNN/9.10.1 LINKS/2.0.1 /2.0.7 /1.1.20
/8.9.6 longranger/2.2.2 qtltools/1.3.1 vcflib/20201113
/8.7.0 LRez/2.2.3 /1.2 vcftools/0.1.16
cufflinks/2.2.1 MAGIC/3.0.0 Qualimap/2.3 vdjtools/1.2.1
CuPy/13.5.1 mallet/202108 QUAST/5.2.0 velvet/1.2.10
cut-run-tools/2.0 manta/1.6.0 qupath/0.2.3 verifybamid/1.0.6
cytoscape/3.6.1v2 mathematica/11.3.0 R-base/4.6.0 viennarna/2.6.4
demuxlet/20210816 matlab/r2020a /4.5.3 WiggleTools/1.2.11
deSALT/1.5.6 /r2019b /4.5.2 wxpython/4.0.7post2
dorado/0.9.0 /r2018b /4.5.1 XeniumRanger/4.0.0
/0.7.3 matlab-ubuntu/r2020a /4.4.3 /3.1.1
/0.6.1 meme/5.5.3 /4.4.2 /3.1.0
/0.5.3 meshroom/2019.2.0 /4.4.1 zumis/20220222
/0.3.3 methpipe/4.1.1 /4.3.3
dropEst/20201211 MethylDackel/0.6.1 /4.3.0
ea-utils/1.04.807 MindTheGap/2.2.3 R-base-lapack/4.3.0
eagle/2.4.1 miniasm/0.3 R-cbrg/202604
Easel/0.49 minimap2/2.28 /202601
edlib/1.2.6 /2.25 /202510
EIGENSOFT/8.0.0 /2.17 /202507
/7.2.1 miranda/3.3a /202504
/202501
/202410
/202407
/202404
/202401
/202310
/202307
/current