R 4.4 packages -- generated 2026-05-05
Reproducibility
Older versions may be available in historic snapshots (run module avail R-cbrg for history).
See R-cbrg for details.
R 4.4 packages
syntax: module / version ( latest snapshot )
abind/1.4-8 GenomicRanges/1.58.0 promises/1.3.2
acepack/1.4.2 /1.56.1 (202501) /1.3.0 (202501)
ACME/2.62.0 GenomicScores/2.18.0 ProtGenerics/1.38.0
/2.60.0 (202501) /2.16.0 (202501) /1.36.0 (202501)
ade4/1.7-22 GenSA/1.1.14.1 proto/1.0.0
adegraphics/1.0-21 /1.1.14 (202501) proxy/0.4-27
admisc/0.37 geometry/0.5.1 proxyC/0.4.1
/0.36 (202501) /0.5.0 (202501) pryr/0.1.6
AER/1.2-14 GEOquery/2.74.0 ps/1.8.1
/1.2-13 (202501) /2.72.0 (202501) /1.8.0 (202501)
affxparser/1.78.0 geosphere/1.5-20 pscl/1.5.9
/1.76.0 (202501) /1.5-18 (202501) psych/2.4.12
affy/1.84.0 gert/2.1.4 /2.4.6.26 (202501)
/1.82.0 (202501) /2.1.1 (202501) purrr/1.0.2
affyio/1.76.0 getopt/1.20.4 pvclust/2.2-0
/1.74.0 (202501) GetoptLong/1.0.5 pwalign/1.2.0
affyPLM/1.82.0 gfonts/0.2.0 /1.0.0 (202501)
/1.80.0 (202501) gg.gap/1.3 pwr/1.3-0
aggregation/1.0.1 ggalluvial/0.12.5 qap/0.1-2
airr/1.5.0 GGally/2.2.1 QCA/3.23
airway/1.26.0 ggalt/0.4.0 /3.22 (202501)
/1.24.0 (202501) ggbeeswarm/0.7.2 qlcMatrix/0.9.8
akima/0.6-3.4 ggbio/1.54.0 qpdf/1.3.4
alabaster.base/1.6.1 /1.52.0 (202501) /1.3.3 (202501)
/1.4.2 (202501) ggbreak/0.1.3 qqconf/1.3.2
alabaster.matrix/1.6.1 /0.1.2 (202501) qqman/0.1.9
/1.4.2 (202501) ggcorrplot/0.1.4.1 qs/0.27.2
alabaster.ranges/1.6.0 ggcyto/1.34.0 /0.26.3 (202501)
/1.4.2 (202501) /1.32.0 (202501) quadprog/1.5-8
alabaster.sce/1.6.0 ggdendro/0.2.0 quantmod/0.4.26
/1.4.0 (202501) ggdist/3.3.3 quantreg/5.99.1
alabaster.schemas/1.6.0 ggExpress/0.9.0 /5.98 (202501)
/1.4.0 (202501) ggExtra/0.10.1 questionr/0.7.8
alabaster.se/1.6.0 ggfittext/0.10.2 QuickJSR/1.5.1
/1.4.1 (202501) ggforce/0.4.2 /1.3.1 (202501)
alakazam/1.3.0 ggforestplot/0.1.0 qusage/2.40.0
ALL/1.48.0 ggfortify/0.4.17 /2.38.0 (202501)
/1.46.0 (202501) ggfun/0.1.8 qvalue/2.38.0
amap/0.8-20 /0.1.6 (202501) /2.36.0 (202501)
/0.8-19 (202501) ggiraph/0.8.12 qvcalc/1.0.3
AmplificationTimeR/1.1.2 /0.8.10 (202501) R.cache/0.16.0
anndata/0.7.5.6 ggjoy/0.4.1 R.devices/2.17.2
annotate/1.84.0 ggm/2.5.1 R.matlab/3.7.0
/1.82.0 (202501) ggmcmc/1.5.1.1 R.methodsS3/1.8.2
AnnotationDbi/1.68.0 ggnetwork/0.5.13 R.oo/1.27.0
/1.66.0 (202501) ggnewscale/0.5.0 /1.26.0 (202501)
AnnotationFilter/1.30.0 ggplot.multistats/1.0.1 R.rsp/0.46.0
/1.28.0 (202501) /1.0.0 (202501) R.utils/2.12.3
AnnotationForge/1.48.0 ggplot2/3.5.1 R2HTML/2.3.4
/1.46.0 (202501) ggplot2movies/0.0.1 R4RNA/1.34.0
AnnotationHub/3.14.0 ggplotify/0.1.2 /1.32.0 (202501)
/3.12.0 (202501) ggpointdensity/0.1.0 R6/2.5.1
AnVIL/1.18.2 ggpolypath/0.3.0 ragg/1.3.3
/1.16.1 (202501) ggprism/1.0.5 RaggedExperiment/1.30.0
AnVILBase/1.0.0 ggpubr/0.6.0 /1.28.1 (202501)
anytime/0.3.11 ggraph/2.2.1 rainbow/3.8
/0.3.9 (202501) ggrastr/1.0.2 randomcoloR/1.1.0.1
aod/1.3.3 ggrepel/0.9.6 randomForest/4.7-1.2
ape/5.8-1 ggridges/0.5.6 /4.7-1.1 (202501)
/5.8 (202501) ggsci/3.2.0 randomForestSRC/3.3.2
apeglm/1.28.0 ggseqlogo/0.2 /3.3.1 (202501)
/1.26.1 (202501) ggsignif/0.6.4 ranger/0.17.0
aplot/0.2.4 ggstance/0.3.7 /0.16.0 (202501)
/0.2.3 (202501) ggstats/0.8.0 RANN/2.6.2
ArchR/1.0.2 /0.6.0 (202501) rapiclient/0.1.8
argparse/2.2.5 ggtangle/0.0.6 /0.1.6 (202501)
/2.2.3 (202501) ggtext/0.1.2 RApiSerialize/0.1.4
argparser/0.7.2 ggthemes/5.1.0 /0.1.3 (202501)
aricode/1.0.3 ggtrace/0.2.0 rappdirs/0.3.3
aroma.light/3.36.0 ggtree/3.14.0 rARPACK/0.11-0
/3.34.0 (202501) /3.12.0 (202501) raster/3.6-30
arrangements/1.1.9 ggupset/0.4.0 /3.6-26 (202501)
arrow/18.1.0.1 ggVennDiagram/1.5.2 RBGL/1.82.0
/17.0.0.1 (202501) gh/1.4.1 /1.80.0 (202501)
ash/1.0-15 git2r/0.35.0 rbibutils/2.3
ashr/2.2-63 /0.33.0 (202501) /2.2.16 (202501)
askpass/1.2.1 gitcreds/0.1.2 RCAS/1.32.0
/1.2.0 (202501) gld/2.6.6 RCircos/1.2.2
assertthat/0.2.1 glmGamPoi/1.18.0 RcisTarget/1.26.0
assorthead/1.0.1 /1.16.0 (202501) /1.24.0 (202501)
ATACseqQC/1.30.0 glmmSeq/0.5.5 rcmdcheck/1.4.0
/1.28.0 (202501) glmmTMB/1.1.10 RColorBrewer/1.1-3
ath1121501.db/3.13.0 /1.1.9 (202501) Rcpm/1.0.4
ath1121501cdf/2.18.0 glmnet/4.1-8 Rcpp/1.0.14
AUC/0.3.2 glmpath/0.98 /1.0.13 (202501)
AUCell/1.28.0 glmpca/0.2.0 RcppAnnoy/0.0.22
/1.26.0 (202501) GlobalOptions/0.1.2 RcppArmadillo/14.2.2-1
aws.s3/0.3.21 globals/0.16.3 /14.0.2-1 (202501)
aws.signature/0.6.0 globaltest/5.60.0 RcppEigen/0.3.4.0.2
Azimuth/0.5.0 /5.58.0 (202501) RcppGSL/0.3.13
babel/0.3-0 glue/1.8.0 RcppHNSW/0.6.0
babelgene/22.9 /1.7.0 (202501) RcppML/0.3.7
babelwhale/1.2.0 gmm/1.8 RcppNumerical/0.6-0
backports/1.5.0 gmodels/2.19.1 RcppParallel/5.1.9
ballgown/2.38.0 gmp/0.7-5 RcppProgress/0.4.2
/2.36.0 (202501) GO.db/3.20.0 RcppRoll/0.3.1
bambu/3.8.0 /3.19.1 (202501) RcppSpdlog/0.0.19
/3.6.0 (202501) goftest/1.2-3 /0.0.18 (202501)
base64/2.0.2 googledrive/2.1.1 RcppThread/2.2.0
/2.0.1 (202501) googlesheets4/1.1.1 /2.1.7 (202501)
base64enc/0.1-3 googleVis/0.7.3 RcppTOML/0.2.2
base64url/1.4 GOSemSim/2.32.0 RcppZiggurat/0.1.6
basilisk/1.18.0 /2.30.2 (202501) RCurl/1.98-1.16
/1.16.0 (202501) goseq/1.58.0 Rdpack/2.6.2
basilisk.utils/1.18.0 /1.56.0 (202501) /2.6.1 (202501)
/1.16.0 (202501) GOstats/2.72.0 reactable/0.4.4
batchelor/1.22.0 /2.70.0 (202501) reactome.db/1.89.0
/1.20.0 (202501) goTools/1.80.0 /1.88.0 (202501)
BatchJobs/1.9 /1.78.0 (202501) ReactomeGSA/1.20.0
batchtools/0.9.17 gower/1.0.2 /1.18.0 (202501)
BayesFactor/0.9.12-4.7 /1.0.1 (202501) ReactomePA/1.50.0
bayesm/3.1-6 GPArotation/2024.3-1 /1.48.0 (202501)
bayesplot/1.11.1 GPfit/1.0-8 reactR/0.6.1
BB/2019.10-1 gplots/3.2.0 readr/2.1.5
BBmisc/1.13 /3.1.3.1 (202501) ReadWriter/1.5.3
bbmle/1.0.25.1 gProfileR/0.7.0 readxl/1.4.3
bcellViper/1.42.0 gprofiler2/0.2.3 recipes/1.1.0
/1.40.0 (202501) graph/1.84.1 RefManageR/1.4.0
BCRANK/1.68.0 /1.82.0 (202501) reformulas/0.4.0
/1.66.0 (202501) graphite/1.52.0 regioneR/1.38.0
bdsmatrix/1.3-7 /1.50.0 (202501) /1.36.0 (202501)
beachmat/2.22.0 graphlayouts/1.2.1 registry/0.5-1
/2.20.0 (202501) /1.1.1 (202501) relations/0.6-14
beadarray/2.56.0 GreyListChIP/1.38.0 /0.6-13 (202501)
/2.54.0 (202501) /1.36.0 (202501) reldist/1.7-2
BeadDataPackR/1.58.0 gridBase/0.4-7 rem/1.3.1
/1.56.0 (202501) gridExtra/2.3 remaCor/0.0.18
beanplot/1.3.1 gridGraphics/0.5-1 rematch/2.0.0
BEDMatrix/2.0.4 gridtext/0.1.5 rematch2/2.1.2
bedr/1.0.7 grImport/0.9-7 remotes/2.5.0
beeswarm/0.4.0 grImport2/0.3-3 rentrez/1.2.3
betareg/3.2-1 grr/0.9.5 renv/1.0.11
BH/1.84.0-0 GSA/1.03.3 /1.0.7 (202501)
BiasedUrn/2.0.12 gsalib/2.2.1 repr/1.1.7
bibtex/0.5.1 GSEABase/1.68.0 reprex/2.1.1
bigD/0.3.0 /1.66.0 (202501) reshape/0.8.9
/0.2.0 (202501) gsignal/0.3-7 reshape2/1.4.4
biglm/0.9-3 gsl/2.1-8 ResidualMatrix/1.16.0
bigmemory.sri/0.1.8 gson/0.1.0 /1.14.1 (202501)
bindr/0.1.2 gss/2.2-8 restfulr/0.0.15
/0.1.1 (202501) /2.2-7 (202501) reticulate/1.40.0
bindrcpp/0.2.3 gsubfn/0.7 /1.39.0 (202501)
binom/1.1-1.1 GSVA/2.0.4 rex/1.2.1
Biobase/2.66.0 /1.52.3 (202501) Rfast/2.1.3
/2.64.0 (202501) GSVAdata/1.42.0 /2.1.0 (202501)
BiocBaseUtils/1.8.0 gt/0.11.1 rfigshare/0.3.8
/1.6.0 (202501) /0.11.0 (202501) rGADEM/2.54.0
BiocFileCache/2.14.0 gtable/0.3.6 /2.52.0 (202501)
/2.12.0 (202501) /0.3.5 (202501) rgl/1.3.16
BiocGenerics/0.52.0 gtools/3.9.5 /1.3.1 (202501)
/0.50.0 (202501) gtrellis/1.38.0 Rgraphviz/2.50.0
BiocIO/1.16.0 /1.36.0 (202501) /2.48.0 (202501)
/1.14.0 (202501) gtsummary/2.0.4 rhandsontable/0.3.8
BiocManager/1.30.25 /2.0.2 (202501) rhdf5/2.50.2
BiocNeighbors/2.0.1 Gviz/1.50.0 /2.48.0 (202501)
/1.22.0 (202501) /1.48.0 (202501) rhdf5filters/1.18.0
BiocParallel/1.40.0 gypsum/1.2.0 /1.16.0 (202501)
/1.38.0 (202501) /1.0.1 (202501) Rhdf5lib/1.28.0
BiocSingular/1.22.0 h2o/3.44.0.3 /1.26.0 (202501)
/1.20.0 (202501) hahmmr/1.0.0 RhpcBLASctl/0.23-42
BiocStyle/2.34.0 hardhat/1.4.0 Rhtslib/3.2.0
/2.32.1 (202501) HardyWeinberg/1.7.8 /3.0.0 (202501)
BiocVersion/3.20.0 harmony/1.2.3 RInside/0.2.18
/3.19.1 (202501) /1.2.1 (202501) rintrojs/0.3.4
biocViews/1.74.0 hash/2.2.6.3 rio/1.2.3
/1.72.0 (202501) haven/2.5.4 /1.2.2 (202501)
biomaRt/2.62.0 HDF5Array/1.34.0 rJava/1.0-11
/2.60.1 (202501) /1.32.1 (202501) rjson/0.2.23
Biostrings/2.74.1 hdf5r/1.3.11 /0.2.22 (202501)
/2.72.1 (202501) HDInterval/0.2.4 RJSONIO/1.3-1.9
biovizBase/1.54.0 HDO.db/1.0.0 rlang/1.1.4
/1.52.0 (202501) /0.99.1 (202501) rle/0.9.2
BiSeq/1.46.0 hdrcde/3.4 rlecuyer/0.3-8
/1.44.0 (202501) hdWGCNA/0.3.03 rliger/2.1.0
BisqueRNA/1.0.5 heatmap3/1.1.9 /2.0.1 (202501)
bit/4.5.0.1 heatmaply/1.5.0 rlist/0.4.6.2
/4.0.5 (202501) here/1.0.1 RMariaDB/1.3.3
bit64/4.5.2 hexbin/1.28.5 /1.3.2 (202501)
/4.0.5 (202501) /1.28.4 (202501) rmarkdown/2.29
bitops/1.0-9 HGNChelper/0.8.15 /2.28 (202501)
/1.0-8 (202501) /0.8.14 (202501) rmdformats/1.0.4
blme/1.0-6 hgu133a.db/3.13.0 rmeta/3.0
blob/1.2.4 hgu133bcdf/2.18.0 Rmisc/1.5.1
blockmodeling/1.1.5 hgu133bprobe/2.18.0 Rmpfr/1.0-0
bluster/1.16.0 hgu133plus2.db/3.13.0 /0.9-5 (202501)
/1.14.0 (202501) hgu95a.db/3.13.0 RMTstat/0.3.1
BMA/3.18.20 hgu95acdf/2.18.0 rmutil/1.1.10
/3.18.17 (202501) hgu95aprobe/2.18.0 RMySQL/0.10.29
bnbc/1.28.0 hgu95av2/2.2.0 /0.10.28 (202501)
/1.26.0 (202501) HiCBricks/1.24.0 rncl/0.8.7
bookdown/0.42 /1.22.0 (202501) RNeXML/2.4.11
/0.40 (202501) HiCcompare/1.28.0 rngtools/1.5.2
boot/1.3-31 /1.26.0 (202501) robCompositions/2.4.1
Boruta/8.0.0 HiddenMarkov/1.8-13 robust/0.7-5
BPCells/0.2.0 hierarchicell/1.0.0 robustbase/0.99-4-1
BradleyTerry2/1.1-2 highcharter/0.9.4 /0.99-4 (202501)
brew/1.0-10 highlight/0.5.1 robustHD/0.8.1
brglm/0.7.2 highr/0.11 ROCR/1.0-11
bridgesampling/1.1-2 Hmisc/5.2-2 Rook/1.2
brio/1.1.5 /5.1-3 (202501) rootSolve/1.8.2.4
brms/2.22.0 HMMcopy/1.48.0 roptim/0.1.6
/2.21.0 (202501) hms/1.1.3 ROTS/1.34.0
Brobdingnag/1.2-9 Homo.sapiens/1.3.1 /1.32.0 (202501)
broom/1.0.7 hopach/2.66.0 roxygen2/7.3.2
/1.0.6 (202501) /2.64.0 (202501) rpart/4.1.24
broom.helpers/1.18.0 HSMMSingleCell/1.26.0 /4.1.23 (202501)
/1.17.0 (202501) /1.24.0 (202501) rpart.plot/3.1.2
BSgenome/1.74.0 htmlTable/2.4.3 Rphenoannoy/0.1.0
/1.72.0 (202501) htmltools/0.5.8.1 Rphenograph/0.99.1
BSgenome.Drerio.UCSC.danRer10/1.4.2 HTMLUtils/0.1.9 rprojroot/2.0.4
BSgenome.Drerio.UCSC.danRer11/1.4.2 htmlwidgets/1.6.4 RProtoBufLib/2.18.0
BSgenome.Drerio.UCSC.danRer7/1.4.0 httpcode/0.3.0 /2.16.0 (202501)
BSgenome.Ggallus.UCSC.galGal5/1.4.2 httpuv/1.6.15 rrcov/1.7-6
BSgenome.Hsapiens.UCSC.hg18/1.3.1000 httr/1.4.7 rsample/1.2.1
BSgenome.Hsapiens.UCSC.hg19/1.4.3 httr2/1.0.7 Rsamtools/2.22.0
BSgenome.Hsapiens.UCSC.hg38/1.4.5 /1.0.4 (202501) /2.20.0 (202501)
BSgenome.Hsapiens.UCSC.hg38.masked/1.4.5 HuExExonProbesetLocationHg19/0.0.3 RSclient/0.7-10
BSgenome.Mmusculus.UCSC.mm10/1.4.3 hwriter/1.3.2.1 rsconnect/1.3.3
BSgenome.Mmusculus.UCSC.mm39/1.4.3 hypergeo/1.2-13 /1.3.1 (202501)
BSgenome.Mmusculus.UCSC.mm9/1.4.0 hypergraph/1.78.0 Rserve/1.8-15
bslib/0.8.0 /1.76.0 (202501) /1.8-13 (202501)
BuenColors/0.5.6 ica/1.0-3 Rsolnp/1.16
bumphunter/1.48.0 IDPmisc/1.1.21 rsparse/0.5.2
/1.46.0 (202501) idr/1.3 RSpectra/0.16-2
BUSpaRse/1.20.0 ids/1.0.1 RSQLite/2.3.9
/1.18.1 (202501) igraph/2.1.3 /2.3.7 (202501)
BWStest/0.2.3 /2.0.3 (202501) rstan/2.32.6
ca/0.71.1 IHW/1.34.0 rstanarm/2.32.1
cachem/1.1.0 illuminaHumanv1.db/1.26.0 rstantools/2.4.0
Cairo/1.6-2 illuminaHumanv3.db/1.26.0 rstatix/0.7.2
calibrate/1.7.7 illuminaHumanv4.db/1.26.0 rstudioapi/0.17.1
callr/3.7.6 illuminaio/0.48.0 /0.16.0 (202501)
car/3.1-3 /0.46.0 (202501) Rsubread/2.20.0
/3.1-2 (202501) immunarch/0.9.1 /2.18.0 (202501)
CARD/1.1 impute/1.80.0 rsvd/1.0.5
carData/3.0-5 /1.78.0 (202501) rsvg/2.6.1
cards/0.4.0 ineq/0.2-13 /2.6.0 (202501)
/0.2.2 (202501) iNEXT/3.0.1 RTCGA/1.36.0
caret/7.0-1 infer/1.0.7 /1.34.0 (202501)
/6.0-94 (202501) infinityFlow/1.16.0 RTCGAToolbox/2.36.0
carrier/0.1.1 /1.14.0 (202501) /2.34.0 (202501)
CATALYST/1.30.2 inflection/1.3.6 rtracklayer/1.66.0
/1.28.0 (202501) influenceR/0.1.5 /1.64.0 (202501)
Category/2.72.0 infotheo/1.2.0.1 Rtsne/0.17
/2.70.0 (202501) ini/0.3.1 Rttf2pt1/1.3.12
caTools/1.18.3 inline/0.3.21 rugarch/1.5-3
cBioPortalData/2.18.1 /0.3.19 (202501) /1.5-2 (202501)
/2.16.0 (202501) insight/1.0.1 RUnit/0.4.33
cccd/1.6 /0.20.4 (202501) ruv/0.9.7.1
ccRemover/1.0.4 InteractionSet/1.34.0 RUVSeq/1.40.0
celda/1.22.0 /1.32.0 (202501) rvcheck/0.2.1
/1.20.0 (202501) interactiveDisplayBase/1.44.0 RVenn/1.1.0
CellBench/1.22.0 /1.42.0 (202501) rversions/2.1.2
/1.20.0 (202501) intergraph/2.0-4 rvest/1.0.4
CellChat/2.1.2 interp/1.1-6 rvg/0.3.4
/1.5.0 (202410) intervals/0.15.5 Rwave/2.6-5
celldex/1.16.0 intrinsicDimension/1.2.0 rworldmap/1.3-8
/1.14.0 (202501) inum/1.0-5 rzmq/0.9.15
cellhashR/1.2.1 invgamma/1.1 /0.9.13 (202501)
/1.0.3 (202501) ipred/0.9-15 s2/1.1.7
cellranger/1.1.0 IRanges/2.40.1 S4Arrays/1.6.0
Cepo/1.12.0 /2.38.1 (202501) /1.4.1 (202501)
/1.10.2 (202501) IRdisplay/1.1 S4Vectors/0.44.0
CGHbase/1.66.0 IRkernel/1.3.2 /0.42.1 (202501)
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chemometrics/1.4.4 /2.4.0 (202501) /1.12.0 (202501)
chickencdf/2.18.0 isotone/1.1-1 SAVER/1.1.2
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ChIPQC/1.42.0 itertools/0.1-3 scales/1.3.0
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chipseq/1.56.0 janitor/2.2.1 scatterpie/0.2.4
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chromVAR/1.28.0 JASPAR2014/1.42.0 scClassify/1.18.0
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chromVARmotifs/0.2.0 JASPAR2020/0.99.10 sccore/1.0.5
chron/2.3-62 jcolors/0.0.5 scCustomize/3.0.1
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circlize/0.4.16 jomo/2.7-6 scDblFinder/1.20.0
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cisTopic/0.2.1 jquerylib/0.1.4 SCDC/0.0.0.9000
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cli/3.6.3 KEGGdzPathwaysGEO/1.44.0 scistreer/1.2.0
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clustifyr/1.18.0 /1.48 (202501) scRepertoire/2.2.1
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clustree/0.5.1 kohonen/3.0.12 scrime/1.3.5
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collapse/2.0.19 /11.0-0 (202501) selectr/0.4-2
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corrr/0.4.4 limmaGUI/1.82.0 /1.9.1 (202501)
covr/3.6.4 /1.80.0 (202501) shinyAce/0.4.3
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cpp11/0.5.1 LinkedMatrix/1.4.0 shinyalert/3.1.0
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crul/1.5.0 lme4/1.1-36 shinystan/2.6.0
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curl/6.1.0 lmom/3.2 ShortRead/1.64.0
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cvar/0.5 Lmoments/1.3-1 siggenes/1.80.0
cvAUC/1.1.4 lmtest/0.9-40 /1.78.0 (202501)
CVST/0.2-3 lobstr/1.1.2 Signac/1.14.0
cvTools/0.3.3 locfdr/1.1-8 SIMLR/1.32.0
cyclocomp/1.1.1 locfit/1.5-9.10 /1.30.0 (202501)
cyCONDOR/0.2.0 logger/0.4.0 simona/1.4.0
CytoDx/1.26.0 /0.3.0 (202501) simplifyEnrichment/2.0.0
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CytofRUV/0.1 lokern/1.1-12 SingleCellExperiment/1.28.1
cytolib/2.18.1 longitudinal/1.1.13 /1.26.0 (202501)
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CytoML/2.18.1 loo/2.8.0 /1.16.0 (202501)
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CytoNorm/2.0.7 /5.6.21 (202501) SingleR/2.8.0
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data.tree/1.1.0 lsa/0.73.3 SkewHyperbolic/0.4-2
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DBI/1.2.3 lubridate/1.9.4 /0.1-53 (202501)
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dbplyr/2.5.0 LymphoSeq/1.34.0 slingshot/2.14.0
dbscan/1.2-0 /1.32.0 (202501) /2.12.0 (202501)
ddalpha/1.3.16 LymphoSeqDB/0.99.2 sm/2.2-6.0
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DDRTree/0.1.5 MAAPER/1.1.1 smoother/1.3
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deepSNV/1.52.0 mapproj/1.2.11 snpStats/1.56.0
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deldir/2.0-4 /7.3-61 (202501) /2.10-0 (202501)
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descr/1.1.8 maxLik/1.5-2.1 /3.1-1 (202501)
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destiny/3.20.0 mda/0.5-5 /3.2-1 (202501)
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e1071/1.7-16 multitaper/1.0-17 tclust/2.0-5
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Ecfun/0.3-6 mutoss/0.1-13 /4.2.0 (202501)
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Ecume/0.9.2 mvtnorm/1.3-3 /1.7-78 (202501)
EDASeq/2.40.0 /1.3-1 (202501) tester/0.2.0
edgeR/4.4.1 N2R/1.0.3 testthat/3.2.3
/4.2.1 (202501) nabor/0.5.0 /3.2.1.1 (202501)
eds/1.8.0 NADA/1.6-1.1 texreg/1.39.4
effects/4.2-2 naivebayes/1.0.0 text2vec/0.6.4
egg/0.4.5 nanoarrow/0.6.0 textshaping/0.4.1
EGSEA/1.34.0 /0.5.0.1 (202501) /0.4.0 (202501)
EGSEAdata/1.34.0 naturalsort/0.1.3 tfautograph/0.3.2
ellipse/0.5.0 NbClust/3.0.1 TFBSTools/1.44.0
ellipsis/0.3.2 NBPSeq/0.3.1 /1.42.0 (202501)
elliptic/1.4-0 ncdfFlow/2.52.0 TFisher/0.2.0
emdbook/1.3.13 /2.50.0 (202501) TFMPvalue/0.0.9
emdist/0.3-3 Nebulosa/1.16.0 tfruns/1.5.3
emmeans/1.10.6 /1.14.0 (202501) TH.data/1.1-2
/1.10.4 (202501) network/1.19.0 this.path/2.7.0
emoa/0.5-3 /1.18.2 (202501) threejs/0.3.3
EMT/1.3.1 networkD3/0.4 tibble/3.2.1
energy/1.7-12 networkDynamic/0.11.5 tictoc/1.2.1
EnhancedVolcano/1.24.0 /0.11.4 (202501) tidygraph/1.3.1
/1.22.0 (202501) networkLite/1.1.0 tidymodels/1.2.0
enrichplot/1.26.6 /1.0.5 (202501) tidyr/1.3.1
/1.24.4 (202501) nichenetr/2.2.0 tidyselect/1.2.1
enrichR/3.2 nleqslv/3.3.5 tidytext/0.4.2
EnsDb.Hsapiens.v79/2.99.0 nlme/3.1-166 tidytree/0.4.6
EnsDb.Hsapiens.v86/2.99.0 nloptr/2.1.1 tidyverse/2.0.0
ensembldb/2.30.0 NLP/0.3-2 tiff/0.1-12
/2.28.1 (202501) /0.3-0 (202501) tigger/1.1.0
entropy/1.3.1 nls2/0.3-4 timechange/0.3.0
EnvStats/3.0.0 nlstools/2.1-0 timeDate/4041.110
Epi/2.59 NMF/0.28 /4032.109 (202501)
/2.55 (202501) NMOF/2.10-1 timeSeries/4041.111
EpiDISH/2.22.0 /2.8-0 (202501) /4032.109 (202501)
erccdashboard/1.40.0 nnet/7.3-20 tinytex/0.54
/1.38.0 (202501) /7.3-19 (202501) /0.53 (202501)
ergm/4.7.5 nnls/1.6 tis/1.39
/4.6.0 (202501) /1.5 (202501) tkrplot/0.0-27
ergm.count/4.1.2 NOISeq/2.50.0 tkWidgets/1.84.0
ergm.multi/0.2.1.1 /2.48.0 (202501) /1.82.0 (202501)
/0.2.1 (202501) nor1mix/1.3-3 tm/0.7-15
escape/2.2.3 nortest/1.0-4 /0.7-14 (202501)
estimability/1.5.1 Nozzle.R1/1.1-1.1 TMB/1.9.16
etm/1.1.1 numbat/1.4.2 /1.9.15 (202501)
etrunct/0.1 /1.4.0 (202501) tmvnsim/1.0-2
eulerr/7.0.2 numDeriv/2016.8-1.1 TOAST/1.20.0
europepmc/0.4.3 nycflights13/1.0.2 tokenizers/0.3.0
evaluate/1.0.3 officer/0.6.7 topGO/2.58.0
/0.24.0 (202501) /0.6.6 (202501) /2.56.0 (202501)
evd/2.3-7.1 oligo/1.70.0 trackViewer/1.42.0
/2.3-7 (202501) /1.68.2 (202501) /1.40.0 (202501)
evmix/2.12 oligoClasses/1.68.0 tradeSeq/1.20.0
Exact/3.3 /1.66.0 (202501) /1.18.0 (202501)
exactextractr/0.10.0 openCyto/2.18.0 TrajectoryUtils/1.14.0
exactRankTests/0.8-35 /2.16.1 (202501) /1.12.0 (202501)
ExperimentHub/2.14.0 OpenImageR/1.3.0 transport/0.15-4
/2.12.0 (202501) openssl/2.3.1 treeio/1.30.0
expm/1.0-0 /2.2.1 (202501) /1.28.0 (202501)
extraDistr/1.10.0 openxlsx/4.2.7.1 triebeard/0.4.1
extrafont/0.19 /4.2.7 (202501) trimcluster/0.1-5
extrafontdb/1.0 optextras/2019-12.4 truncdist/1.0-2
extRemes/2.2 optimx/2024-12.2 truncnorm/1.0-9
/2.1-4 (202501) /2023-10.21 (202501) truncreg/0.2-5
factoextra/1.0.7 optparse/1.7.5 trust/0.1-8
FactoMineR/2.11 orcutt/2.3 TSCAN/1.44.0
fail/1.3 ordinal/2023.12-4.1 /1.42.0 (202501)
fANCOVA/0.6-1 org.At.tair.db/3.20.0 tseries/0.10-58
fansi/1.0.6 /3.19.1 (202501) /0.10-57 (202501)
farver/2.1.2 org.Dm.eg.db/3.20.0 tsna/0.3.5
fastcluster/1.2.6 /3.19.1 (202501) tsne/0.1-3.1
fastdigest/0.6-4 org.Dr.eg.db/3.20.0 TSP/1.2-4
fastDummies/1.7.4 /3.19.1 (202501) TTR/0.24.4
fastICA/1.2-7 org.Gg.eg.db/3.20.0 tune/1.2.1
/1.2-5.1 (202501) /3.19.1 (202501) tweeDEseqCountData/1.44.0
fastmap/1.2.0 org.Hs.eg.db/3.20.0 /1.42.0 (202501)
fastmatch/1.1-6 /3.19.1 (202501) tweenr/2.0.3
/1.1-4 (202501) org.Mm.eg.db/3.20.0 TxDb.Celegans.UCSC.ce6.ensGene/3.2.2
fastmatrix/0.5-9017 /3.19.1 (202501) TxDb.Dmelanogaster.UCSC.dm3.ensGene/3.2.2
fBasics/4041.97 org.Rn.eg.db/3.20.0 TxDb.Hsapiens.UCSC.hg18.knownGene/3.2.2
FD/1.0-12.3 /3.19.1 (202501) TxDb.Hsapiens.UCSC.hg19.knownGene/3.2.2
fda/6.2.0 org.Sc.sgd.db/3.20.0 TxDb.Hsapiens.UCSC.hg38.knownGene/3.20.0
/6.1.8 (202501) /3.19.1 (202501) /3.18.0 (202501)
FDb.InfiniumMethylation.hg19/2.2.0 OrganismDbi/1.48.0 TxDb.Mmusculus.UCSC.mm10.knownGene/3.10.0
fdrtool/1.2.18 /1.46.0 (202501) TxDb.Mmusculus.UCSC.mm9.knownGene/3.2.2
fds/1.8 orientlib/0.10.5 TxDb.Rnorvegicus.UCSC.rn4.ensGene/3.2.2
feather/0.3.5 orthopolynom/1.0-6.1 txdbmaker/1.2.1
ff/4.5.2 osfr/0.2.9 /1.0.1 (202501)
/4.0.12 (202501) packrat/0.9.2 tximeta/1.24.0
fftw/1.0-9 PADOG/1.48.0 /1.22.1 (202501)
/1.0-8 (202501) PAIRADISE/1.22.0 tximport/1.34.0
fftwtools/0.9-11 /1.20.0 (202501) /1.32.0 (202501)
fGarch/4033.92 paletteer/1.6.0 tximportData/1.34.0
fgsea/1.32.2 palmerpenguins/0.1.1 /1.32.0 (202501)
/1.30.0 (202501) pamr/1.57 tzdb/0.4.0
fields/16.3 pan/1.9 UCell/2.10.1
/16.2 (202501) pander/0.6.5 /2.8.0 (202501)
FigR/0.1.0 parallelDist/0.2.6 ucminf/1.2.2
filelock/1.0.3 parallelly/1.41.0 UCSC.utils/1.2.0
findpython/1.0.9 /1.38.0 (202501) /1.0.0 (202501)
/1.0.8 (202501) parallelMap/1.5.1 umap/0.2.10.0
fit.models/0.64 ParamHelpers/1.14.2 unglue/0.1.0
fitdistrplus/1.2-2 /1.14.1 (202501) units/0.8-5
/1.2-1 (202501) parsnip/1.2.1 universalmotif/1.24.2
FLAMES/2.0.2 party/1.3-17 /1.22.2 (202501)
/1.10.3 (202501) partykit/1.2-23 UpSetR/1.4.0
flashClust/1.01-2 /1.2-22 (202501) urca/1.3-4
flexdashboard/0.6.2 pastecs/1.4.2 urlchecker/1.0.1
flexmix/2.3-19 patchwork/1.3.0 urltools/1.7.3
float/0.3-2 pathview/1.46.0 uroot/2.1-3
flowAI/1.36.0 /1.44.0 (202501) useful/1.2.6.1
/1.34.0 (202501) pbapply/1.7-2 usethis/3.1.0
flowAssist/0.0.0.9000 pbdZMQ/0.3-13 /3.0.0 (202501)
flowClust/3.44.0 /0.3-12 (202501) utf8/1.2.4
/3.42.0 (202501) pbkrtest/0.5.3 uuid/1.2-1
flowCore/2.18.0 pbmcapply/1.5.1 uwot/0.2.2
/2.16.0 (202501) pcaExplorer/3.0.0 V8/6.0.0
FlowSOM/2.14.0 /2.30.0 (202501) /5.0.0 (202501)
/2.12.0 (202501) pcaMethods/1.98.0 VAM/1.1.0
flowStats/4.18.0 /1.96.0 (202501) varhandle/2.0.6
/4.16.0 (202501) pcaPP/2.0-5 variancePartition/1.36.3
flowTrans/1.58.0 PCAtools/2.18.0 /1.34.0 (202501)
/1.56.0 (202501) /2.16.0 (202501) VariantAnnotation/1.52.0
flowViz/1.70.0 pd.hugene.2.1.st/3.14.1 /1.50.0 (202501)
/1.68.0 (202501) pd.mogene.2.0.st/3.14.1 vars/1.6-1
flowWorkspace/4.18.0 pdftools/3.4.1 vcd/1.4-13
/4.16.0 (202501) /3.4.0 (202501) vcfR/1.15.0
FNN/1.1.4.1 pdist/1.2.1 vctrs/0.6.5
/1.1.4 (202501) PeacoQC/1.16.0 vdiffr/1.0.8
fontawesome/0.5.3 /1.14.0 (202501) /1.0.7 (202501)
/0.5.2 (202501) penalized/0.9-52 vegan/2.6-8
fontBitstreamVera/0.1.1 Peptides/2.4.6 velocyto.R/0.6
fontLiberation/0.1.0 perm/1.0-0.4 venn/1.12
fontquiver/0.2.1 permute/0.9-7 VennDiagram/1.7.3
forcats/1.0.0 perry/0.3.1 verification/1.44
foreach/1.5.2 PFAM.db/3.20.0 /1.42 (202501)
forecast/8.23.0 /3.19.1 (202501) VGAM/1.1-12
foreign/0.8-88 pfamAnalyzeR/1.6.0 /1.1-11 (202501)
/0.8-87 (202501) /1.4.0 (202501) VIM/6.2.2
formatR/1.14 phangorn/2.12.1 vioplot/0.5.0
formattable/0.2.1 /2.11.1 (202501) vip/0.4.1
Formula/1.2-5 pheatmap/1.0.12 vipor/0.4.7
fortunes/1.5-4 philentropy/0.9.0 viridis/0.6.5
fpc/2.2-13 /0.8.0 (202501) viridisLite/0.4.2
/2.2-12 (202501) phyclust/0.1-34 visNetwork/2.1.2
fracdiff/1.5-3 phylobase/0.8.12 vroom/1.6.5
fresh/0.2.1 phylotate/1.3 vsn/3.74.0
fs/1.6.5 pillar/1.10.1 /3.72.0 (202501)
/1.6.4 (202501) /1.9.0 (202501) waffle/1.0.2
fst/0.9.8 pinfsc50/1.3.0 waiter/0.2.5
fstcore/0.9.18 pixmap/0.4-13 waldo/0.6.1
furrr/0.3.1 pkgbuild/1.4.5 /0.5.3 (202501)
futile.logger/1.4.3 /1.4.4 (202501) warp/0.2.1
futile.options/1.0.1 pkgconfig/2.0.3 waveslim/1.8.5
future/1.34.0 pkgdown/2.1.1 webshot/0.5.5
future.apply/1.11.3 /2.1.0 (202501) WGCNA/1.73
/1.11.2 (202501) pkgload/1.4.0 /1.72-5 (202410)
fuzzyjoin/0.1.6 pkgmaker/0.32.10 whisker/0.4.1
gage/2.56.0 PKI/0.1-14 whoami/1.3.0
/2.54.0 (202501) plm/2.6-4 widgetTools/1.84.0
gageData/2.44.0 plogr/0.2.0 /1.82.0 (202501)
/2.42.0 (202501) plot3D/1.4.1 wiggleplotr/1.30.0
gam/1.22-5 plotly/4.10.4 /1.28.0 (202501)
gamlss/5.4-22 plotmo/3.6.4 withr/3.0.2
gamlss.data/6.0-6 plotrix/3.8-4 /3.0.1 (202501)
gamlss.dist/6.1-1 pls/2.8-5 wk/0.9.4
gamm4/0.2-6 plyr/1.8.9 /0.9.3 (202501)
gargle/1.5.2 plyranges/1.26.0 workflows/1.1.4
gbRd/0.4.12 /1.24.0 (202501) workflowsets/1.1.0
gbutils/0.5 PMCMRplus/1.9.12 writexl/1.5.1
gcatest/2.6.0 png/0.1-8 /1.5.0 (202501)
/2.4.0 (202501) poilog/0.4.2.1 WriteXLS/6.7.0
gclus/1.3.2 /0.4.2 (202501) wrMisc/1.15.2
gcrma/2.78.0 poLCA/1.6.0.1 xbioc/0.1.19
/2.76.0 (202501) polspline/1.1.25 xergm.common/1.7.8
gdata/3.0.1 Polychrome/1.5.1 xfun/0.50
/3.0.0 (202501) polyclip/1.10-7 /0.47 (202501)
gdtools/0.4.1 polylabelr/0.3.0 xgboost/1.7.8.1
/0.4.0 (202501) /0.2.0 (202501) xlsx/0.6.5
geepack/1.3.12 polynom/1.4-1 xlsxjars/0.6.1
/1.3.11.1 (202501) poorman/0.2.7 XML/3.99-0.18
genefilter/1.88.0 posterior/1.6.0 /3.99-0.17 (202501)
/1.86.0 (202501) poweRlaw/0.80.0 xml2/1.3.6
geneLenDataBase/1.42.0 powerTCR/1.26.0 xmlparsedata/1.0.5
/1.40.1 (202501) /1.24.0 (202501) xopen/1.0.1
GeneNet/1.2.16 prabclus/2.3-4 xtable/1.8-4
GeneOverlap/1.42.0 /2.3-3 (202501) xts/0.14.1
/1.40.0 (202501) pracma/2.4.4 /0.14.0 (202501)
geneplotter/1.84.0 praise/1.0.0 XVector/0.46.0
/1.82.0 (202501) precrec/0.14.4 /0.44.0 (202501)
GeneralizedHyperbolic/0.8-6 preprocessCore/1.68.0 yaImpute/1.0-34.1
generics/0.1.3 /1.66.0 (202501) /1.0-34 (202501)
GENIE3/1.28.0 preseqR/4.0.0 yaml/2.3.10
/1.26.0 (202501) presto/1.0.0 YAPSA/1.32.0
genio/1.1.2 prettyunits/1.2.0 /1.30.0 (202501)
genomation/1.38.0 primeviewprobe/2.18.0 yardstick/1.3.1
/1.36.0 (202501) princurve/2.1.6 yarrr/0.1.5
GenomeInfoDb/1.42.1 prismatic/1.1.2 yeast2.db/3.13.0
/1.40.1 (202501) pROC/1.18.5 yulab.utils/0.1.9
GenomeInfoDbData/1.2.13 processx/3.8.5 /0.1.7 (202501)
/1.2.12 (202501) /3.8.4 (202501) zCompositions/1.5.0-4
genomeIntervals/1.62.0 prodlim/2024.06.25 zeallot/0.1.0
/1.60.0 (202501) profileModel/0.6.1 zellkonverter/1.16.0
GenomicAlignments/1.42.0 profvis/0.4.0 zinbwave/1.28.0
/1.40.0 (202501) /0.3.8 (202501) /1.26.0 (202501)
GenomicDataCommons/1.30.0 progress/1.2.3 zip/2.3.1
/1.28.0 (202501) progressr/0.15.1 zlibbioc/1.52.0
GenomicFeatures/1.58.0 /0.14.0 (202501) /1.50.0 (202501)
/1.56.0 (202501) proj4/1.0-14 zoo/1.8-12
GenomicPlot/1.4.0 projpred/2.8.0